Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00966 ATGGCTGTTCAACTGACTGTCGCTGCCGCGCCGGCTTCGCTTTACGTCGGAGACCTTCACCCTGACATCTCCGACACCCAACTCTTCCAGGCTTTCTCGGAATTCGAAAGCCTCACTTCTGTTCGCGTCTGCAGAGACTCCATGACGAGGACGTCGCTCCGTTACGGTTATGTCAACTTCATGTCTCAGGAAGATGCAATTCGTGCAATCAAGTTGAAAAACAATTCTTATCTCTTTGGAAAAGTTATAAGGGTCATGTGGTCACATCGTGATCCTAATGCAAGGAAAAGTGGTAAAGGGAATGTGTTTGTTAAGAACTTACCTGAATCCATAGATAATGCGGGGTTACATGATTTATTTCAAAAATATGGGAATATTTTGTCCACCAAAGTTTGCGTGTATGACGATGGGAAGAGCAGAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTATATTGTGAGAGACAAGCAGATATATGTTGGGGACTTTATCCGAAAAGGTGATCGTGTTTTGCCCGGTAATGATGCCAAATATACAAATTTGTACATCAAAAATTTGGACTCGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCCCTTTTGGAAAAATTATTAGTTTGGCTATTGCAAAGGATGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAATCCAGATGATGCTAGAAAGGCCATAAAAGCAATGAACGGATTACAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAGAAGAAGGCTGAACGTGAGAAAATCTTGCAACATCAATTTGAGGAAAAACGCAAGGAACAAATGTTGAAGTCAAAAGGTTCTAATCTTTATGTGAAGAACATTGATGACAGTGTTAGTGAAAAAGAACTAAGAGATCTGTTTAGTTCATGTGGCACAATAACTTCAGTAAAAGTTATGCGAAATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTTAGCACTTTTTATGGATGCATGTTCCACCGTAAACCACTGTATATTGCTATCGCTCAGAGGAAAGAGGATAGGAAAACGCAGTTGAAGCTCCACTATTCACCGCAACAAGCAGCATTGGATGGACCTTCAACTGCAGTTATTCCTACTGGATTTCCACCTTTCTTCTATCCTAATGTCACTTCGCAGATGCTTCAATCTGGGCTTTTGTATCAACCTCTTGGATTGGGATCAGGATGGAGGGCTAATGAATTTGCGCCTCCCACTAGATCATTTCAACAATCCCAGGTTCCTATTGTTCCTAACTCTACTAGGAATCATAGGCAAAATAGGGGCAGGATGAACGGGTATATGAATTCAGTGGGAAAAGCTCAGTCTGGTGTGTATATCCCGCATCTGCAACACTATTATCAGCCAATGGACTCTTCAATAATCGAGCACTTTACAGCAGCGAAGATTCCAGGAATGCTTTTGGGGACGAACAATGAAGAATTGACGCATTTCCTGGAATCAAGAGACACTTCCTGCGTAGGTGGTAGTGCAAGTGGTGTGTTTTTGTGCCCTGTTTGGAGCTTAGATCATGACGTGCAACCTTCACCCTCCACCTACCAAGAAGCTATGGTGGTGTTTGGGAAAATCAATAAGAAAAGACTTGAATTGACTAGAATGGGTAGAAAGAGTAAGAAAGAGAGAAGAAGAAGAAGATCCCATGATTCTTCATCAGAGTCGCCTTCATCACAGTCCGATGATGATTCGGACAGCCGTAATTCGTCGTCTCCGGAGAGACGCCGGAGAGACGATCATCGCAGCCACCGTTGTTTGCGGCGGGGACGGAGCAGGCACGGCTCGGATAGTTCCTCTGATGAGAGTAGTGACCGGGGTGGCAAGAAGAAGAAGTCCTCCAGGCACATTACTGAAGAGGAAATAGCACAGTACTTGGCCAAAAAGGCTCAGAGAAAGGCATTGAAAGTTGCCAAGAAACTAAAGACTCATACAGTGTCAGGGTATTCGAATGATGCAAATCCATTTGGTGACTCTAATCTTAATGAGAAGTTTGTTTGGCGGAAGAAGATTGAGCGTGATGTTGTTCAAGGTGTGCCTATTGATGCATTTTCAGTTAAAGCTGAAAAAAAGAGATTGAGAGAACGGATGGCAGAAATAGAAAAGGTGAAAAAAAGAAGAGAAGAAAGGGCACTTGAGAAAGCACGACATGAAGAAGAAATGGCACTGTTAGATAGAGAACGTGCACGAGCTGAGTTCCATGACTGGGAAAAAAGAGAAGAGGAGTTTCATTTTGATCAAAGCAAGGTTAGATCTGAGATTAGATTGCGAGAAGGGCGGGCCAGGCCAATTGATATCCTAACCAAGCATCTCAATGGATCCGATGATATAGATATAGAAATAAATGAACCATACATGGTGTTCAAGGGTTTGACAGTAAAGGAAATGGAAGAGCTTCGTGATGACATCAAAATGCATCTGGACCTTGACAGGGCGACAGCCACCCATGTTGAATATTGGGAGGCACTCCTTCTGGTGTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAAGATGCAATTGATCGAGCTAGAGTACATGGTGAGGAACCCCCCGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATCACAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACACGCAGAATTAGAAGCTTTACAGGAACATATAGCATCAGAAATGCGTACTGGTACAGCGAAGGTGGTTGAGTACTGGGAGGCAGTGTTAAAACACCTCCACATATACAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAGATGCTACGCAAGCACGTGCAACATCTTGAACAACCATTAGAGGATGAAGATAAATTATGGGATGCACAAGTTAGAAACTCAGAGGAAGGTATCGAGCATTACGATAAAGTCCAATCTGCAGATGAATCATTTTCACCCGAACCCATTAAAGGAGAAGATCAAGATGCTGAGGATCAGGCTGGCTCATTTTCACCGGAACTGTTTCATGGTGACGAAAATGAGGAAGCTATTGACCCTGAAGAGGACAGGGCTCTACTGGAGCGGAAACGTATGGCGGTAAGGGAAGAGCAGCAAAGACAAATTCAAGAAGCAATTGCATCAAAGCCTGCTCCATCTGAAGATAATTTTGAGATGAAAGCCATGAAAGCTATGGGAGCTATGGAAGACGGGGATGCAGTGTTTGGCTCTGGTGCTGAAGTGAATCTAGATTCACAGGTTTATTGGTGGCACGACAAATACAGGCCCAGGAAGCCAAAGTATTTCAATCGTGTTCACACTGGATACGAATGGAATAAATATAATCAGACTCACTATGATCATGACAATCCACCACCAAAGGTTGTACAGGGGTATAAATTTAACATCTTCTACCCGGATCTAGTAGACAAGACAAAGGCTCCAACTTACACCATCGAGAAGGATGGTAGCAATGGGGAGACTTGCATCATAAGATTTCATGCAGGGCCACCATATGAAGACATTGCTTTTCGCATTGTTAACAAAGAATGGGAATATTCTCATAAGAAAGGTTTTAGGTGCACATTTGAACGTGGAATTCTACATGTGTACTTCAATTTCAAACGCTACCGCTACCGCAGATAA 3708 0.4326 MAVQLTVAAAPASLYVGDLHPDISDTQLFQAFSEFESLTSVRVCRDSMTRTSLRYGYVNFMSQEDAIRAIKLKNNSYLFGKVIRVMWSHRDPNARKSGKGNVFVKNLPESIDNAGLHDLFQKYGNILSTKVCVYDDGKSRGYGFVQFESEESANNAIEKLNGYIVRDKQIYVGDFIRKGDRVLPGNDAKYTNLYIKNLDSDITEALLQEKFSPFGKIISLAIAKDDNGLSKGFAFVNYDNPDDARKAIKAMNGLQFGSKNLYVARAQKKAEREKILQHQFEEKRKEQMLKSKGSNLYVKNIDDSVSEKELRDLFSSCGTITSVKVMRNDKGISKGFGFVCFSNPEEANKAVSTFYGCMFHRKPLYIAIAQRKEDRKTQLKLHYSPQQAALDGPSTAVIPTGFPPFFYPNVTSQMLQSGLLYQPLGLGSGWRANEFAPPTRSFQQSQVPIVPNSTRNHRQNRGRMNGYMNSVGKAQSGVYIPHLQHYYQPMDSSIIEHFTAAKIPGMLLGTNNEELTHFLESRDTSCVGGSASGVFLCPVWSLDHDVQPSPSTYQEAMVVFGKINKKRLELTRMGRKSKKERRRRRSHDSSSESPSSQSDDDSDSRNSSSPERRRRDDHRSHRCLRRGRSRHGSDSSSDESSDRGGKKKKSSRHITEEEIAQYLAKKAQRKALKVAKKLKTHTVSGYSNDANPFGDSNLNEKFVWRKKIERDVVQGVPIDAFSVKAEKKRLRERMAEIEKVKKRREERALEKARHEEEMALLDRERARAEFHDWEKREEEFHFDQSKVRSEIRLREGRARPIDILTKHLNGSDDIDIEINEPYMVFKGLTVKEMEELRDDIKMHLDLDRATATHVEYWEALLLVCDWELAEARKKDAIDRARVHGEEPPAELLAEERGLHHSVEPDVKRLLQGKTHAELEALQEHIASEMRTGTAKVVEYWEAVLKHLHIYKAKACLKEIHAKMLRKHVQHLEQPLEDEDKLWDAQVRNSEEGIEHYDKVQSADESFSPEPIKGEDQDAEDQAGSFSPELFHGDENEEAIDPEEDRALLERKRMAVREEQQRQIQEAIASKPAPSEDNFEMKAMKAMGAMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFRCTFERGILHVYFNFKRYRYRR 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00966 1235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Spst7g00966 1235 MobiDBLite consensus disorder prediction 569 655 - -
Spst7g00966 1235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Spst7g00966 1235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Spst7g00966 1235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Spst7g00966 1235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Spst7g00966 1235 SMART rrm1_1 13 86 IPR000504 GO:0003723
Spst7g00966 1235 SMART rrm1_1 295 367 IPR000504 GO:0003723
Spst7g00966 1235 SMART rrm1_1 192 264 IPR000504 GO:0003723
Spst7g00966 1235 SMART rrm1_1 101 173 IPR000504 GO:0003723
Spst7g00966 1235 Gene3D - 102 173 IPR012677 -
Spst7g00966 1235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723
Spst7g00966 1235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Spst7g00966 1235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Spst7g00966 1235 MobiDBLite consensus disorder prediction 993 1019 - -
Spst7g00966 1235 FunFam Polyadenylate-binding protein 277 385 - -
Spst7g00966 1235 SUPERFAMILY RNA-binding domain, RBD 13 178 IPR035979 GO:0003676
Spst7g00966 1235 CDD RRM4_I_PABPs 293 371 - -
Spst7g00966 1235 Gene3D - 177 276 IPR012677 -
Spst7g00966 1235 Gene3D - 277 380 IPR012677 -
Spst7g00966 1235 Pfam Cactus-binding C-terminus of cactin protein 1111 1235 IPR019134 GO:0005515
Spst7g00966 1235 CDD RRM2_I_PABPs 98 173 IPR045305 -
Spst7g00966 1235 MobiDBLite consensus disorder prediction 629 655 - -
Spst7g00966 1235 FunFam Polyadenylate-binding protein 4 96 - -
Spst7g00966 1235 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 402 IPR006515 GO:0003723
Spst7g00966 1235 Coils Coil 720 769 - -
Spst7g00966 1235 SMART rrm2_1 101 173 IPR003954 GO:0003676
Spst7g00966 1235 SMART rrm2_1 192 264 IPR003954 GO:0003676
Spst7g00966 1235 SMART rrm2_1 295 367 IPR003954 GO:0003676
Spst7g00966 1235 SMART rrm2_1 13 86 IPR003954 GO:0003676
Spst7g00966 1235 MobiDBLite consensus disorder prediction 993 1036 - -
Spst7g00966 1235 SMART CactinC_cactus_3 1111 1235 - -
Spst7g00966 1235 Pfam Conserved mid region of cactin 763 960 IPR018816 -
Spst7g00966 1235 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 638 1235 - -
Spst7g00966 1235 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
Spst7g00966 1235 Gene3D - 6 101 IPR012677 -
Spst7g00966 1235 FunFam Polyadenylate-binding protein 97 181 - -
Spst7g00966 1235 FunFam Polyadenylate-binding protein 182 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00966 Spst-Chr7 16369515 16385028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00966 12 461 Eukaryotic Initiation Factors Gene Family AT2G36660 56.954 3.26e-171 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00966 K25058 - gmx:100780087 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00966 7 16369515 16385028 Spst7g00966 7 16369515 16385028 ECH
Spst1g02818 1 36723491 36727626 Spst7g00966 7 16369515 16385028 PCT