Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00931 AAGCTACTAGAGTTTGAACTTGTCAAGATCGTCCAGGTCGAAAAGAAAAGGCAGTGGATGAAGAAACATTGGATGTTGTTTTTTTGGGACTTTGATTTGGCGGGCATGGAGAACTCGCGTAGACCATTTGATAGATCACGAGAACTGGGTTCAAAGAAGCCCCGATTGATGGAAGAGCTGGATCGGGCTTCAAATTCGGGTGCCAGACAGTTTCCTCATCGACAAGTGGCTTCTGCGATTACGACGTTGTCGTCTGCAAGGTTTAGAACAAACGAAAGAGGTCTTGAAAGCAGTGATTTTGGTCGCCCAGGTGGTGCTGGTGGCGGTGGTTATCAGCCACAACCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCCGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTTCACCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTATTTCCTCCTCAGACCCTTCATATTATTGAGAAAGAATTGGGCTTCACTTCTGCTGTCAATGGCTCATCTTCTGTTTCTACTACACTGAAGAGTGATTCACAGTCACAGCGTCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGACAACGACTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATCACTGGAGCAATGTCAAACTCAAATGATGACCAAGAGATGCCGAGTAGAACATTGGGTGTTGTACGACCATGGGTGGATCCTAATAATGATCAGCGTGCTCGTAGAGATGCGTTCAATGATTCTGTTCCAGAGAAGAGCACTGGTGCGACTTATGGAAGCAATGAATTTGGTTCAAATCTTTCAAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGTCTGGACAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGACGTTGGATGCACATCATCAATCAGCACCAAACATAACACAGAGCAGTGTGATCTCGAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCATGGTGCATCCACTGTTAACAACTTGAGCAAAGATGCTTGGACTGCTGATGATAATTTGGTAAGCTTGGTACTATTTGGTGATATGGGTATCAAAATGATGCAAAACATGTTGGAAAAAAAGCTAACTCCTACATTGGTTAGAGATAAAGCTTGA 1515 0.437 KLLEFELVKIVQVEKKRQWMKKHWMLFFWDFDLAGMENSRRPFDRSRELGSKKPRLMEELDRASNSGARQFPHRQVASAITTLSSARFRTNERGLESSDFGRPGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLHIIEKELGFTSAVNGSSSVSTTLKSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDITGAMSNSNDDQEMPSRTLGVVRPWVDPNNDQRARRDAFNDSVPEKSTGATYGSNEFGSNLSRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMSGQRNGLSLKYSFLNTEAPKSMTLDAHHQSAPNITQSSVISNSWKNSEEEEYTWDEMNSGLTGHGASTVNNLSKDAWTADDNLVSLVLFGDMGIKMMQNMLEKKLTPTLVRDKA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00931 504 Gene3D - 117 242 IPR008942 -
Spst7g00931 504 FunFam polyadenylation and cleavage factor homolog 4 114 242 - -
Spst7g00931 504 MobiDBLite consensus disorder prediction 278 309 - -
Spst7g00931 504 MobiDBLite consensus disorder prediction 252 309 - -
Spst7g00931 504 Pfam CID domain 126 234 IPR006569 -
Spst7g00931 504 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 85 472 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Spst7g00931 504 SMART 558neu5 120 242 IPR006569 -
Spst7g00931 504 SUPERFAMILY ENTH/VHS domain 120 239 IPR008942 -
Spst7g00931 504 MobiDBLite consensus disorder prediction 92 113 - -
Spst7g00931 504 CDD CID_Pcf11 122 234 IPR047415 -
Spst7g00931 504 MobiDBLite consensus disorder prediction 252 269 - -
Spst7g00931 504 ProSiteProfiles CID domain profile. 117 245 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00931 Spst-Chr7 15273212 15282378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00931 108 451 C2H2 Transcription Factor Family AT4G04885 38.418 5.04e-60 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00931 K14400 - gmx:100807857 738.028