Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00930 ATGCTTGTTGAATTAGGCTCAAATCTATATTCTAAAGAAGTTGAAGATCGCCTACCAGTCAGAAATCCTTTTGGGGTAAATGTTGATAGAGAAATAGCCATTGAATCTCAAGCCACTGAAAAGAAACAATTACCTGCTTCTCGTCATCATCCGTCACTATCATGGCAATTGCAGGAGCAACACTCTATTGATGAGTTGAATCGGAAGGCTGGTCACTCGGGCAGATTTGTGTCCACACTAGGTGCAATACCATCCAATACAAATTCCTCGACTGCCAGGATGGGGAATCAGCCATACCTGTCAAATGCAACCACAGGATTGCCAGGAATTTCAGGACCATTTCATTCGTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCGACAGAGGTCTCCATCACCACCAGATTCTTCACCTGCCCTTCGCCCTAATATTCAGGATGATAACTTACAAAGATCACAACTGAAAACCTTGCAGGGTCCATTCTCTTCAATGACTTTTAAGGCTAGGCATCAGCAGCAATTGAGCACTTCTCACAATGAAGTTACTGTTAAGACTGAGAAGCCACCTGTGTCCAAAGTTCCTTTAGCCAGAGAAACTAAAAATAGCATGAGTACAGGGAATCTTTCAACTCGATTGGGTGTTCGGCTTTCAAGATCAGATGGTCCTTCCCCTGTCACATTAATTTCGTCAGTTTCCACAATTTCATCACCATCTTCATTAGGCCCTACCAGTGATAATTTATCTGCCCTCTCAAAAATACCTCAAAGAAAAGCTGGACAACCACCTAGGGCGTCTACGCTAACTTCTGCTTCCTCTAATGTCAGCAGTGCTTCAGCACAGACAAGTGATACCAATAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAGCAGAGTCAACAACTAAGGTACCCTCTGAGTTGCTGAGTAGATTAGAAGAAGAACGTGATAGCATTACCACTAGTAGCTCTTTGCCTGTGGCCTCAGTTTCTGGTTCTGCAGCTGTCCCAGTCCATTCTATCAAAGATGACGTAGATGACACTGCAAGAACACCCATATCCTTGTCTGAATCAACCAGCCCAGGAATTGTAAATCTCATTGGGTTCGAGTTTAAGCCTGATGTAATCCGAGAATTCCATTCATCTGTTATTAGTGGATTATTTGATGATCTTCCACACCATTGCAGCATTTGTGGCTTTAGGCTTAAATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCAGTAGGGAAAGAGAAGATAATGGTTTAATTAAGGCATCAAGATGGTATTTGAAGTCAAGTGACTGGATTGCTGGCAAGGCTGAATATCTATCTGAGAATGAGTTTGCTGATTCTGTAGATACATATGGTAAGGAAGCAGACATAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTGTTTGAAGATTTTTACTGTCAGGAAAGTGGTGAGTGGATGTTCAAAGAGGCTGTTTACTTGGCTTACTCTGATAGCAACAGTGAGCTGGTAATTAGAGATACGAGTACTGGAAGGGGTCCCATCATTCATACAAGTTGCTTATCAGATAACTTGATTTCCAGTGTCCTTGAGATGTTAAAACTTGCCAATGTGATATTAACTCGCGATATGTTCCAAGAGACTAAAATAGCGTAA 1728 0.4207 MLVELGSNLYSKEVEDRLPVRNPFGVNVDREIAIESQATEKKQLPASRHHPSLSWQLQEQHSIDELNRKAGHSGRFVSTLGAIPSNTNSSTARMGNQPYLSNATTGLPGISGPFHSLGAENPSGQSPLRQRSPSPPDSSPALRPNIQDDNLQRSQLKTLQGPFSSMTFKARHQQQLSTSHNEVTVKTEKPPVSKVPLARETKNSMSTGNLSTRLGVRLSRSDGPSPVTLISSVSTISSPSSLGPTSDNLSALSKIPQRKAGQPPRASTLTSASSNVSSASAQTSDTNNTLNPIANLLSSLVAKGLISAEAESTTKVPSELLSRLEEERDSITTSSSLPVASVSGSAAVPVHSIKDDVDDTARTPISLSESTSPGIVNLIGFEFKPDVIREFHSSVISGLFDDLPHHCSICGFRLKFQKQFNRHLEWHASREREDNGLIKASRWYLKSSDWIAGKAEYLSENEFADSVDTYGKEADISQEDAMVVADENQCLCVLCGELFEDFYCQESGEWMFKEAVYLAYSDSNSELVIRDTSTGRGPIIHTSCLSDNLISSVLEMLKLANVILTRDMFQETKIA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00930 575 MobiDBLite consensus disorder prediction 80 109 - -
Spst7g00930 575 MobiDBLite consensus disorder prediction 118 132 - -
Spst7g00930 575 MobiDBLite consensus disorder prediction 80 151 - -
Spst7g00930 575 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 547 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Spst7g00930 575 MobiDBLite consensus disorder prediction 199 255 - -
Spst7g00930 575 MobiDBLite consensus disorder prediction 170 186 - -
Spst7g00930 575 MobiDBLite consensus disorder prediction 263 289 - -
Spst7g00930 575 MobiDBLite consensus disorder prediction 170 289 - -
Spst7g00930 575 ProSitePatterns Zinc finger C2H2 type domain signature. 407 427 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00930 Spst-Chr7 15269056 15273175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00930 367 544 C2H2 Transcription Factor Family AT4G04885 34.807 2.58e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g00930 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00930 K14400 - gmx:100807857 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00930 7 15269056 15273175 Spst7g00930 7 15269056 15273175 ECH
Spst1g02776 1 36246303 36251979 Spst7g00930 7 15269056 15273175 PCT