Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00906 ATGGGCCTAAAACGGCATAACCCTTCAAAATCGCCGTTTACTCTCTGCTCCTGCTCATCTTCACCCTGTCAATCTCTCAGAAAGATGAAGGTGGTCGCCGCGTATTTACTCGCCGTCCTCGGAGGCAACTCCAGCCCCTCAGCCGCTGTCATCAAGGATATTCTCGGTTCTGTTGGAGCAGAAGCAGATGAAGATAGGATAGAACTATTTTTGTCTGAAATCAAGGGAAAGGATATAGTTGAGGTTATTGCTGCCGGTAGGGAAAAGTTGGCCTCAGTTCCCTCTGGTGGTGGTGGTGGCGCTGTTGCTGTAGCCGCAGCACCTGGGGGAGGTGGTGCTGCTGCTCCTGCCGCCGAGGCAAAGAAAGAGGAAAAAGTGGAAGAGAAAGAGGAATCAGATGATGATATGGGTTTCAGTCTTTTTGATTAA 429 0.5012 MGLKRHNPSKSPFTLCSCSSSPCQSLRKMKVVAAYLLAVLGGNSSPSAAVIKDILGSVGAEADEDRIELFLSEIKGKDIVEVIAAGREKLASVPSGGGGGAVAVAAAPGGGGAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00906 142 MobiDBLite consensus disorder prediction 108 142 - -
Spst7g00906 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 29 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
Spst7g00906 142 FunFam 60S acidic ribosomal protein P2 27 87 - -
Spst7g00906 142 Pfam 60s Acidic ribosomal protein 45 141 - -
Spst7g00906 142 Gene3D - 28 87 IPR038716 -
Spst7g00906 142 Hamap 50S ribosomal protein L12 [rpl12]. 30 142 IPR027534 GO:0003735|GO:0005840|GO:0006414
Spst7g00906 142 CDD Ribosomal_P2 29 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00906 Spst-Chr7 13458354 13459799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00906 29 142 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.298 2.88e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00906 K02943 - gmx:100499761 132.109