Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00880 ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGGCAGGGCCATAAACTCCCTGCTGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAAGGTGCAGGAGAGCCTCCACACCCACCTGCCCAGATCGTTGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAGATGTCAGACATAGTAGGATGCTTTAACCAGCGAGCGCAGGCATTGCTGGAACTACATCTTGCTTCTGGCTTCAGAAAATACTTTCTTATGTTGAAAGGAAAATTGCAGAGGAATCATAATGCTCTAATCGAAGAAGGCAAAGATCTAGTCATATATGCACTTATAAATGCCATTGCAATTCGAAAAATATTAAAGAAATATGACAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCAAAAGTCCAGACAATGCACAAGGAAATTCTTCAAAGTCCTTGGCTTTGTGAGCTTATTGCCTTACACATTAACTTAAGGGGAAAAAAGGCCAAGTCAAGGGAGGCAGCTGCACTATTTGATGGATGTTATCTCACATTCAAGGATGGAAAACCTTCACTTAGTTGTGAGCTCTTTGATTCCATCAAAATTGACATTACCCTCACATGCTCCATATGCTTGGATACAGTGTTTGATCCAGTTTCTTTGATGTGCGGTCACATATTCTGCTACTCCTGCGCTTGCTCAGCTGCATCAGTCACCATTGTCGATGGACTTAAGGCAGCAAATTCCAAACAAAAATGTCCTCTTTGCCGACAGGAAAGAGCTTACGATGATGCTGTGCACTTGGAAGAATTGAATATTCTGCTTGGCCGAAGCTGCAAAGAGTACTGGGAGCAAAGGCTTCAGATGGAAAGAACAGAGAGGGTTAAGCAAGTGAAGGAGCACTGGGAAACGCAGTGTAGGGTGTTCGTGGGCATCTAA 942 0.4352 MKFCKTYQQYMQGQGHKLPAVGFKKLKKIMKRCRRASTPTCPDRCPVCDGTFFPSLLNEMSDIVGCFNQRAQALLELHLASGFRKYFLMLKGKLQRNHNALIEEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRGKKAKSREAAALFDGCYLTFKDGKPSLSCELFDSIKIDITLTCSICLDTVFDPVSLMCGHIFCYSCACSAASVTIVDGLKAANSKQKCPLCRQERAYDDAVHLEELNILLGRSCKEYWEQRLQMERTERVKQVKEHWETQCRVFVGI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00880 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 312 IPR033326 -
Spst7g00880 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 311 IPR013083 -
Spst7g00880 313 CDD RING-HC_BAH1-like 199 272 - -
Spst7g00880 313 ProSiteProfiles SPX domain profile. 1 140 IPR004331 -
Spst7g00880 313 Pfam Zinc finger, C3HC4 type (RING finger) 207 260 - -
Spst7g00880 313 ProSiteProfiles Zinc finger RING-type profile. 209 258 IPR001841 -
Spst7g00880 313 SMART ring_2 209 257 IPR001841 -
Spst7g00880 313 CDD SPX_BAH1-like 2 136 - -
Spst7g00880 313 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Spst7g00880 313 SUPERFAMILY RING/U-box 202 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00880 Spst-Chr7 10523847 10532827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00880 207 260 C3H Transcription Factor Family AT4G28270 38.983 3.39e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00880 K16275 - gmx:100803060 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00880 7 10523847 10532827 Spst7g00880 7 10523847 10532827 ECH
Spst7g00880 7 10523847 10532827 Spst1g02539 1 34007934 34010620 PCT