Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00822 ATGTACCTATGGCTAGCATTGCTGAAGGATTGGAAGAGTGGAAGCATAAAAGGATATGGGGTAAGACTGCAAAGAAAAAGCCGTGTAGATAGTAAAACCGGGGAGTCTAGGCAGAAGGAGTACAAAGAAACCCATTGGGATCAAAAAAGGCCGAAAGCCCAAACAAAAACAAAACCCTATAGTCAGCAACCTTATATTCCTACACCGTCCCCGAATCCTAGTCCTCAAAACCCTAATCCACACAACTCCAGTGAAGAAACCAGCGGTCCAATGCCACCGAAGTTCGATCCCTCGCAGGTGGTGGACGTGTTCGTCCGCGTCACGGGCGGCGAGGTCGGTGCGGCGAGTTCCCTCGCCCCGAAGATCGGTCCGTTGGGACTCTCTCCGAAGAAGATCGGTGAAGACATCGCCAAGGAGACCGCAAAGGACTGGAAGGGCCTCCGTGTGACGGTGAAGCTCACCGTTCAGAACCGCCAGGCCAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTTGTCATCAAAGCGCTCAAAGAACCCGAGAGAGACAGGAAAAAGACTAAGAACATAAAGCACAACGGAAACATCTCCCTCGACGACGTTATTGAGATCGCGAGGGTGATGAGTCCGCGCTCCATGGCGAAGGATCTGAGCGGAACCATTAAAGAGATCCTTGGCACTTGTGTGTCGGTTGGGTGTACCGTCGACGGGAAAGACCCCAAGGATCTGCAGCAAGAGATTACCGATGGCGACGTTGAGGTTCCTCTTGAATGA 771 0.5331 MYLWLALLKDWKSGSIKGYGVRLQRKSRVDSKTGESRQKEYKETHWDQKRPKAQTKTKPYSQQPYIPTPSPNPSPQNPNPHNSSEETSGPMPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00822 256 MobiDBLite consensus disorder prediction 20 97 - -
Spst7g00822 256 ProSitePatterns Ribosomal protein L11 signature. 221 236 IPR020785 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 Pfam Ribosomal protein L11, RNA binding domain 165 234 IPR020783 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 CDD Ribosomal_L11 103 234 IPR000911 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 SMART rl11c 103 235 IPR000911 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 Gene3D - 172 254 IPR036769 -
Spst7g00822 256 Hamap 50S ribosomal protein L11 [rplK]. 99 236 IPR000911 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 MobiDBLite consensus disorder prediction 23 54 - -
Spst7g00822 256 Gene3D - 86 171 IPR036796 -
Spst7g00822 256 PANTHER 60S RIBOSOMAL PROTEIN L12 91 241 IPR000911 GO:0003735|GO:0005840|GO:0006412
Spst7g00822 256 FunFam 60S ribosomal protein L12 91 171 - -
Spst7g00822 256 SUPERFAMILY Ribosomal protein L11, C-terminal domain 166 239 IPR036769 -
Spst7g00822 256 MobiDBLite consensus disorder prediction 64 78 - -
Spst7g00822 256 FunFam 60S ribosomal protein L12 172 254 - -
Spst7g00822 256 Pfam Ribosomal protein L11, N-terminal domain 105 159 IPR020784 -
Spst7g00822 256 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 88 177 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00822 Spst-Chr7 8698807 8703522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00822 91 254 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.024 4.76e-106 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00822 K02870 - oeu:111369398 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00822 7 8698807 8703522 Spst7g00822 7 8698807 8703522 ECH
Spst7g00822 7 8698807 8703522 Spst11g01358 11 38094040 38094540 ECH