Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00815 ATGGGTAACATAGGAAGTAGCGGCACCAACAGCCGCCGGAGACACGGTGGAGGCGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCTCCTCCGCCGGTGATGCATCCACCCGAAGTCACGGCGAATCAATTCGTGTACCCTCCCGCCGCGACTCCGTATCACAACTATCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCTCCTTATGACCATCACCACCGTCAGGCGGTGGACCCGATGTGGGGGAGGTACCCGGCCGTGCCGGCACCGGCGCCGTATGTGGAGCACCAGAAGGCTGTTACTATAAAAAACGATGTTAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAAAATCCTGGCCGTTTCCTCGTGACGTTTACGTTTGATGCCACCGTTTCCGGGAGCATTACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAACCCCGATGAAGGAAAATGTTCTTCTACCGGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCTATATTTGAGGAGTCGGAGTTATTGAATGTGGGGGACATGGATGTGTATCCTGTAGCAATTAGAGCAGATGCATCATCCTCTGGCGACCATGATGAATTGAAATCAAATGAAACGCCATCATCTGGTAACACAAACTCCCAGATTACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGACGGGAATGACCCAGGAAAAGAGTGTGTTATATGTTTGTCAGAGCCTCGAGACACGACCGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCTAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAGCCTGAGGAGTGA 1050 0.5105 MGNIGSSGTNSRRRHGGGGSGRRIHPPPPPPPVMHPPEVTANQFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRQAVDPMWGRYPAVPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVTFTFDATVSGSITILFFAKEGEGCTLTPMKENVLLPVTVNFQQGLGQKFKQPAGTGIDFSIFEESELLNVGDMDVYPVAIRADASSSGDHDELKSNETPSSGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00815 349 SMART ring_2 293 331 IPR001841 -
Spst7g00815 349 SUPERFAMILY RING/U-box 292 338 - -
Spst7g00815 349 MobiDBLite consensus disorder prediction 23 37 - -
Spst7g00815 349 CDD mRING-HC-C3HC5_MGRN1-like 291 332 IPR045195 -
Spst7g00815 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Spst7g00815 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Spst7g00815 349 MobiDBLite consensus disorder prediction 218 238 - -
Spst7g00815 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Spst7g00815 349 PANTHER MAHOGUNIN 1 342 IPR045194 GO:0061630
Spst7g00815 349 MobiDBLite consensus disorder prediction 1 39 - -
Spst7g00815 349 FunFam probable E3 ubiquitin-protein ligase LOG2 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00815 Spst-Chr7 8570004 8573679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00815 87 312 C3H Transcription Factor Family AT3G09770 64.255 1.79e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00815 - - gmx:100789032 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00815 7 8570004 8573679 Spst7g00815 7 8570004 8573679 ECH
Spst1g02906 1 37665300 37670088 Spst7g00815 7 8570004 8573679 PCT