Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00813 ATGGCAACTGAAGCTGCAGACTCTTCCAACGTCAACAATAACCAAGGCCATGGCACCACTGGAAATAGAACCGATATCCCAATCCAAAAGGGTCCAGCATCATCTGAAATAACTGAGGAACTCCCAGGAGATCGACATGGGACAAGGCAAAACCTTATCGTGGATATACCTCCAATATCTCACGAGGATCCAAAGGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAAAGTGATTTTTTCCCCTTGTCCAAGTCCTGTTTTCCCGAGAAGCAAAGAATCCCCTGGTCCCTCCACATCAAAAAATAGATCAAATATTAAAACCTTTCTTCCCAAACTCAGTTTTAAATTCCGCAACACAAGTTTGGAGATTGAAAAGGCTGCTTTCCTAGCACTTGAAGGATCAGCAACAGTGGCGCCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCTGGGTCTGTACATGGCGGGAACATGGTTTATGCAGAAACAGTAGAGAATGAACCGCAATTACCAATTCATCGATCCCGTTCAGTACCTGTGCTTAACAAAGAAGGTAACTCACCCGCACGTGGCATGTTTCGTATAGTTCTAACCACACCACGTTTGGATGATAAAATTACCACAACACCTATGACGTCTCCAATTCATGACACTGTTAAAAATGAGGATGACGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTTGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGATGTTCAGAATCTTCCTGTCACTCTTTTACGAGTTCAAAATGGTCAGGGTCATAACATACTGGGGGCTGATGCTTCTCATTACCGGGTTTGGCAGGACGCTCCCATTCTTGTTGTGATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCTGGTGCCATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTTTCTGGTGGTTCTTTCTGGACATCTTTTCTTTTCATTGGTTCATATGCAAGCTGTTCTAGCTATCCTGTTAGCTACATTTACTGGGTTTGGAGTTGTGATGTGTGGAGCTTCTATTCTTATGGAGATTCTAAAGTGGAGGGGGAGATCACTTGCTCAGTCAAATCAACAGCAAGGATCCCTAGAGGCAGTGCCACCTGATCAATCAGCTACAGTTGATCATCAAGCTCAAACTGCTTCTGAACAAACAGAAAGCAATTTGGGAGAGTCTCCTGCACAGAGGAGTTAA 1509 0.4248 MATEAADSSNVNNNQGHGTTGNRTDIPIQKGPASSEITEELPGDRHGTRQNLIVDIPPISHEDPKEDYVRINMPLTPPPRKVIFSPCPSPVFPRSKESPGPSTSKNRSNIKTFLPKLSFKFRNTSLEIEKAAFLALEGSATVAPKKPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNMVYAETVENEPQLPIHRSRSVPVLNKEGNSPARGMFRIVLTTPRLDDKITTTPMTSPIHDTVKNEDDGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQDVQNLPVTLLRVQNGQGHNILGADASHYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFFLVVLSGHLFFSLVHMQAVLAILLATFTGFGVVMCGASILMEILKWRGRSLAQSNQQQGSLEAVPPDQSATVDHQAQTASEQTESNLGESPAQRS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00813 502 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Spst7g00813 502 SMART ringv_2 260 309 IPR011016 GO:0008270
Spst7g00813 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 316 IPR013083 -
Spst7g00813 502 MobiDBLite consensus disorder prediction 159 179 - -
Spst7g00813 502 MobiDBLite consensus disorder prediction 88 108 - -
Spst7g00813 502 MobiDBLite consensus disorder prediction 1 51 - -
Spst7g00813 502 CDD RING_CH-C4HC3_MARCH 261 309 - -
Spst7g00813 502 MobiDBLite consensus disorder prediction 1 31 - -
Spst7g00813 502 SUPERFAMILY RING/U-box 257 312 - -
Spst7g00813 502 MobiDBLite consensus disorder prediction 464 502 - -
Spst7g00813 502 MobiDBLite consensus disorder prediction 231 252 - -
Spst7g00813 502 PANTHER OS02G0165000 PROTEIN 16 470 - -
Spst7g00813 502 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00813 Spst-Chr7 8525917 8531450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00813 247 315 C3H Transcription Factor Family AT2G37950 40.000 6.90e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00813 - - gmx:100787963 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00813 7 8525917 8531450 Spst7g00813 7 8525917 8531450 ECH