Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00811 ATGCAAATGATGCCCGGTGACCCTTTTTCCCTATCTACTTCAATCGGAGGCTTCTCTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTATCGCCCAAGACCCTCATGGCAACGAACCGATTCATATGCGAAATATGTAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTCCCATGGAAGCTACGACAAAGGTCCAATAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCAGAACAATCCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAGTCAGATTGGAAAGCCCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACCCATAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTACCTCAACAAATCTAAATTTCAAGAGTGAAGAGGGTGGAAATGGGATGAACTCGCAGCATGGTTTGGGAGGCCATGCACTACTTGCAGCACAAAGTCTTCAAAATGTTTCTGGCATTCCACAATTTAGTCCACATGGTTTTCGTTTGGATTTTAATGGAATGGAACAACCGAGGCCTAGCTTGTCACTGTGGTTGAACCAAGGGAATCCCCAGATGAATAATAATAGTAATGTTAGTAGCAACAATAATGGTCCCGATGTGGGACCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGCTTTGATGGGTTCTTCATCGATGGTATCTAATTTTGGAGTGCCTGCGGGTTCTAATTCCACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTATTGGGAAAAGAGGGGAAACAGGTGGAACTGTAGTGGACTTGGCTTCAATTTATAATTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAACAACAACAACGGCGGTGCAGGCATGATGCTGGGAAGTAACACTGCTGCTGCAGCAACTGATTTTACCTCATTGACGCATTCATCAAACAGTTTTGAAGAACTTGTGATGCAAACCAATGCGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAGCTTCGTTCAAGGGCCGTGGAGCACAATTTGACAAGGGATTTTCTTGGAGTCAGTGGAGGAGGAGGAGGTGGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCCTTGGGCTCGCCAATGGGATTGAGCCAATTCACAAGTAACCAATGA 1563 0.4664 MQMMPGDPFSLSTSIGGFSQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNGMNSQHGLGGHALLAAQSLQNVSGIPQFSPHGFRLDFNGMEQPRPSLSLWLNQGNPQMNNNSNVSSNNNGPDVGPNYMSSCSSSGLPDIVQMAQANALMGSSSMVSNFGVPAGSNSTSANLSLSSLPIGKRGETGGTVVDLASIYNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNNGGAGMMLGSNTAAAATDFTSLTHSSNSFEELVMQTNAQLQSEPVKLKLRSRAVEHNLTRDFLGVSGGGGGGGPQFLPQELAKFASLGSPMGLSQFTSNQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00811 520 FunFam protein indeterminate-domain 12-like 43 111 - -
Spst7g00811 520 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Spst7g00811 520 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Spst7g00811 520 Gene3D Classic Zinc Finger 119 197 - -
Spst7g00811 520 SMART c2h2final6 64 86 IPR013087 -
Spst7g00811 520 SMART c2h2final6 140 160 IPR013087 -
Spst7g00811 520 SMART c2h2final6 105 135 IPR013087 -
Spst7g00811 520 MobiDBLite consensus disorder prediction 1 48 - -
Spst7g00811 520 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Spst7g00811 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 494 IPR031140 -
Spst7g00811 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Spst7g00811 520 MobiDBLite consensus disorder prediction 1 25 - -
Spst7g00811 520 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Spst7g00811 520 Gene3D Classic Zinc Finger 42 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00811 Spst-Chr7 8518117 8520013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00811 1 508 IDZ Gene Family AT5G03150 46.099 3.83e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g00811 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00811 K25870 - gmx:100801182 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00811 7 8518117 8520013 Spst7g00811 7 8518117 8520013 ECH
Spst1g02915 1 37719026 37720970 Spst7g00811 7 8518117 8520013 PCT