Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00809 GTTTCTGGTGCTTCTGGTGTATTATACATGCTTACATATGCATGTGATGGTGGGATGTGCTTGCGTTGGAAATTCTCTTTCGTTGTCTCTGTTCCCCAGTTTTCTTTAGCAATTTACCCTTCACGGATCTTTTCAAGCAGTTTTTGGTATATGATCACTTATACCCTGGGTCCATATTATAGTGATGTTATGGAAGTGAATGAATTTCTTCATTGGCTTGATGATCAGAAGCTTATATTTCTCCTCTCCTTCAGAAATAATTGCCAGTGGCGATTCTCCTCAATTGGCCAAATTGTGTGGCTGGTAGTCATGCTTCTCTTTTTGTGCATGCCTGTTGATGGCGTTCTAATTCACAGGGCTGTAGCCTTCATCTATCATGCAATTTCGGTGGTTAATTGGAACACTAACATAGATAGTATAGTTCATGCTCTGGAGTTGAAGTTTCAAGCTAAGTGGTCTTCTGTAGGCCTAGATCCTTTTGCCCTACATGTGGAAGTGCCAGTGGTGCTTGTATGTGCTGTAAGTGGAAGAGGAAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAGTCATATGCATACTGATCAACAATATGTTAACCTTGGTAGGACTCCCACTTCAGACAATGGTTCTTATATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCACCAAGGTCAAATGGATATGCCTCCACAACTCTCAACACTGAAGTACCCCCTCATCAATCAGATGTATCAGGCACTTCTCATGACCATTTTCTGCATTCATCAAATGCTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAAGCATTTAACGTTGCTGATGGGGGTTTTATAGATCTCACAATGGGAAATGGGCGAGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATATTTTAATGCTGCTAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAACCCAATATGGATTATATGCCTTGGGATCATGTTAATATGACACCCGATCATGTGAATATGACACCCACATTTAGAGGTAGAGGCCTTTCAATACGTGGTGAGAGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTAGAATCCAACCTGGCTAGGACCCATTTATCAAATACTCATTCACACAACTCATTCTCTACTGGTCAACAAATGGACCAATCTAGCATGGTTGATCTTTCAACTCAAACTTCTGGAACTATGACAAGGGATTGGAGCCAAATGAGTGTTTGTCCTGCTCATGGAAGGGTGCCATCATTAGATGCTAATGCTTTTAATCATGAGGCGAGTCATTTCCTTATTGGAAGTGGATCTAGTAATCCTCCTGTAGATGTTGGAGGTTTTCATAATGAGTTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATAGTCTGATTCAACCTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCACTTGGGTCGTGTGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGCTACTCTTCTAGACATCCAAGGCCTTTGACCACCGTTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAAGATTTGATTTCCAAGTTTTTGACAGAAACAATATACTGTTCATCCGAGCAAAGTCAAGAAGACGAAACTTGTGCTATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTGTCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAAGAAACGAAGGATAAATAA 2169 0.4186 VSGASGVLYMLTYACDGGMCLRWKFSFVVSVPQFSLAIYPSRIFSSSFWYMITYTLGPYYSDVMEVNEFLHWLDDQKLIFLLSFRNNCQWRFSSIGQIVWLVVMLLFLCMPVDGVLIHRAVAFIYHAISVVNWNTNIDSIVHALELKFQAKWSSVGLDPFALHVEVPVVLVCAVSGRGRHLYSSSPMFEGEPDQNWSHMHTDQQYVNLGRTPTSDNGSYIYPLENMSIDSISFPSHWNTAPRSNGYASTTLNTEVPPHQSDVSGTSHDHFLHSSNAGMFYAVSENYVHQPSSSNYDRQAFNVADGGFIDLTMGNGRGPHKRKSPGVPSVCERGSTSRYFNAASANAADRPTSSELRPEKPNMDYMPWDHVNMTPDHVNMTPTFRGRGLSIRGESSLRNVRSRSALDLESNLARTHLSNTHSHNSFSTGQQMDQSSMVDLSTQTSGTMTRDWSQMSVCPAHGRVPSLDANAFNHEASHFLIGSGSSNPPVDVGGFHNEFGTSRNPTAPQSFHNNSLIQPARGVRSNYSQRSTPTFRASSSLHLGRVAPSDDGLHMVAESYSSRHPRPLTTVGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKFLTETIYCSSEQSQEDETCAICLEEYKNMDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00809 722 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 634 715 - -
Spst7g00809 722 CDD RING-H2_RNF24-like 667 714 - -
Spst7g00809 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 715 IPR013083 -
Spst7g00809 722 Pfam Ring finger domain 668 711 IPR001841 -
Spst7g00809 722 SMART ring_2 669 710 IPR001841 -
Spst7g00809 722 ProSiteProfiles Zinc finger RING-type profile. 669 711 IPR001841 -
Spst7g00809 722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 292 715 IPR045191 GO:0061630
Spst7g00809 722 SUPERFAMILY RING/U-box 657 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00809 Spst-Chr7 8456903 8463683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00809 179 721 C3H Transcription Factor Family AT2G37150 40.675 1.44e-100 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00809 - - gmx:547939 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00809 7 8456903 8463683 Spst7g00809 7 8456903 8463683 ECH
Spst1g02918 1 37741013 37750481 Spst7g00809 7 8456903 8463683 PCT