Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00787 ATGGCCGATGCTCCCGCGAGTCCAGGCGGCGGCGGCAGCCACGAGAGTGGCGACCACAGTCCCCGCTCCAATTTTCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAAGAAACCGTGCAGGAATGCGTGTCCGAGTTCATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGTGACGATTTGCTTTGGGCTATGACCACTTTAGGTTTCGAAGAATACGTTGATCCACTCAAGATTTATCTAGCCTCTTACCGAGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGAGACATCTGCTAAGAGAGATGTTTATCAAAATCCTAATGTCCAGGTGGAGAATCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCTCAGAATGTTAGGAGAGAGGCTGATGCTTCATTCACGTGA 519 0.5125 MADAPASPGGGGSHESGDHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIYLASYREGDSKGSAKGGETSAKRDVYQNPNVQVENLAHQGSFSQGVNYTNSQNVRREADASFT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00787 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Spst7g00787 172 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Spst7g00787 172 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Spst7g00787 172 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Spst7g00787 172 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Spst7g00787 172 MobiDBLite consensus disorder prediction 117 172 - -
Spst7g00787 172 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst7g00787 172 Gene3D Histone, subunit A 18 156 IPR009072 GO:0046982
Spst7g00787 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst7g00787 172 MobiDBLite consensus disorder prediction 1 28 - -
Spst7g00787 172 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Spst7g00787 172 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00787 Spst-Chr7 8211261 8212410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00787 1 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.000 3.21e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst7g00787 CBFD_NFYB_HMF 7.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00787 K08065 - gmx:100791435 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00787 7 8211261 8212410 Spst7g00787 7 8211261 8212410 ECH
Spst6g00188 6 1951221 1953377 Spst7g00787 7 8211261 8212410 ECH
Spst8g00237 8 2023452 2025909 Spst7g00787 7 8211261 8212410 ECH
Spst1g02937 1 37980358 37985182 Spst7g00787 7 8211261 8212410 PCT