Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00785 ATGGCCGCAGCTGCCCGCCCCCTCGTCACCGTCCAGTCCCTCGAGGGTGACATGGCCACCGACGCCTCCACCACCGTCCCCATCCCCGACGTCATGAAGGCCTCCATCCGCCCCGACATCGTCAATTTCGTCCACTCCAACATCTCCAAGAACAGCCGCCAGCCCTATGCCGTCAGCCGCCGCGCCGGTCACCAGACCTCAGCCGAGTCCTGGGGTACCGGTCGTGCCGTCTCCCGTATCCCTCGTGTGCCCGGTGGAGGAACCCACCGCGCAGGCCAGGGAGCTTTCGGTAACATGTGCCGCGGTGGGCGCATGTTCGCCCCAACAAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGTTACGCCGTTGTCTCCGCCATCGCCGCCTCTGCCATCCCTTCCCTTGTCCTCGCCCGCGGCCACCGAATCGATACCGTACCCGAACTCCCCCTCGTCGTCAGCGACTCTGCCGAAGGCGTCGAGAAAACCAAGGAAGCGATCAAAGTCCTGAAACAGATCGGCGCTTTCCCCGACGCCGAGAAGGCGAAAGACAGCCACGGTATTCGCCCTGGCAAGGGTAAAATGCGTAACCGTCGCTACATCTCCCGAAAGGGTCCACTCATCGTGTATGGAACTGAAGGAGCAAAAGCTGTTAAGGCTTTCCGTAACGTTCCCGGAGTTGAAGTGGCCAATGTTGAGAGACTCAACCTTCTGAAGCTCGCTCCTGGTGGTCATCTTGGTCGGTTCGTGATTTGGACCAAGTCTGCTTTTGAGAAACTCGACTCCATTTATGGTTCTTTTGATAAGCCCAGTGAGAAGAAGAAGGGATACCTGCTGCCCAGGCCCAAGATGGTGAACTCAGACCTTTCCAGGATTATTAATTCTGACGAGGTTCAGTCCGTCGTCAGGCCCATTAAGAAGGACGTGACTCGGGCCACGCTCAAGAAGAACCCTCTCAAGAATCTCAATGTCATGCTCAAGCTCAATCCCTACGCCAAGACTGCCAAGAGGATGGCTCTGCTCGCTGAGGCCCAGCGTGTTAAGGCCAAGAAGGAGAAGCTCGATAAGAAGAGGAAGATTGTCTCTAAGGATGAAGCTTCTAAGATTAAGGCTGCAGGAAAGGCATGGTATCACACAATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTGA 1218 0.5616 MAAAARPLVTVQSLEGDMATDASTTVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIDTVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLSRIINSDEVQSVVRPIKKDVTRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKIVSKDEASKIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00785 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Spst7g00785 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Spst7g00785 405 MobiDBLite consensus disorder prediction 54 96 - -
Spst7g00785 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Spst7g00785 405 FunFam 60S ribosomal protein L4 3 308 - -
Spst7g00785 405 Coils Coil 342 362 - -
Spst7g00785 405 SUPERFAMILY Ribosomal protein L4 10 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Spst7g00785 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Spst7g00785 405 MobiDBLite consensus disorder prediction 54 73 - -
Spst7g00785 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00785 Spst-Chr7 8166340 8168414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00785 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.416 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00785 K02930 - gmx:100779764 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00785 7 8166340 8168414 Spst7g00785 7 8166340 8168414 ECH
Spst1g02946 1 38065385 38066817 Spst7g00785 7 8166340 8168414 PCT