Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00784 ATGAACTCCAGCACACCCAATTCTCAGTCAATGGCGGCGGCGGCAGCAGCGAGTGATGGGTCGGGGAAGAAGGTGAGAAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTCATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCTAAGCGAAAAGCTGCTCATCCTTATCCACAAAAAGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCTTCAACAAATATGCTTGCACCTGGGTTTGCCACATGGGAGGAAACCTCCCTGCTGATGAATGCAGGAGCCAATAAATCCATGACCTGTCAGGATGAACTCAACAATCTTCGTGGAAATGAAGCTGATATTGGATCAAAGGGGCTAACACAGATTACCAACAGCAGTGTTAGTGGTGTTGGAAATTCTATTAGAATGCTACCAACTTCTGATATACCAAAGCAAGGGAAACAAGCTCCCGTACTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATAGGAAGTGTATTTGATCCAGATACAAATGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCGGTGTACAACCTCATCTCCTTGATGTTTTATCTGTGTGA 831 0.4332 MNSSTPNSQSMAAAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSTNMLAPGFATWEETSLLMNAGANKSMTCQDELNNLRGNEADIGSKGLTQITNSSVSGVGNSIRMLPTSDIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIGVQPHLLDVLSV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00784 276 MobiDBLite consensus disorder prediction 1 37 - -
Spst7g00784 276 ProSiteProfiles SANT domain profile. 33 86 IPR017884 -
Spst7g00784 276 MobiDBLite consensus disorder prediction 1 15 - -
Spst7g00784 276 CDD SANT 37 80 IPR001005 -
Spst7g00784 276 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Spst7g00784 276 Gene3D - 38 85 - -
Spst7g00784 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Spst7g00784 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 82 IPR006447 GO:0003677
Spst7g00784 276 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Spst7g00784 276 SUPERFAMILY Homeodomain-like 29 85 IPR009057 -
Spst7g00784 276 FunFam protein REVEILLE 6 isoform X1 37 85 - -
Spst7g00784 276 PANTHER SWI/SNF COMPLEX-RELATED 17 257 - -
Spst7g00784 276 SMART sant 34 82 IPR001005 -
Spst7g00784 276 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00784 Spst-Chr7 8157620 8161745 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst7g00784 Myb_DNA-binding 3.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00784 - - vra:106754423 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00784 7 8157620 8161745 Spst7g00784 7 8157620 8161745 ECH
Spst1g02947 1 38068735 38070812 Spst7g00784 7 8157620 8161745 PCT