Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00768 ATGGAAGAAACAACATCAACTATCATCATGGCTGCACTCTCCACCCTCACCACTTCCCAATTCTCAGATCTCACTCACTCCATTCTCTCCACCACCCACCACCACCATCGCCGCCTCGCCTCCCTCCTTTCTTCCCCAACGCTCTTCTCGCTAACCCTCCACCACCTCCACACCCTTTCCCTCCCCCAGAAAACCCTCCTCATCGCCCGCCATCTCCTCTCCTCCCTCCACCTCCTCACCGCCACCTCCCCGTCGCCATCCACGACCACGAGGCAGCGCGACCTCGACGCAGCTCTCCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAATCCACATGCCCTCGAGGCACCTTTTTCCCAATGGAGGGTCAACCTCAGCACCATATTCTCCGATTCATTGTTGACGTTTTCCTTTGCACCCCTAGGGGCATGCATGGGCTCGCCGGTGCTGATTCCCTTCGTTGAGACCGTGACGCGGTGCTGGAGACTCGTCGGCACGCTGGATTGCGGCGGAGGAAAGGAATTGGACGAGGTGGCGGCGTCGGCTGCGGCGGTGGTGGCGCTGCCCTCGGTGGAGGTGAGGGCCGGTGGGAGAGAGTGTGTGATCTGCAGAGAGGAAATGAGAATAGGGAGGGACGTGTGCGAATTGCCATGTCAGCACTTGTTTCATTGGATGTGTATCTTACCGTGGCTGGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTAGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGCCTGTGGGAAGTCTTGGTTAAAACGGCTGCAAAATATTCATAG 810 0.5778 MEETTSTIIMAALSTLTTSQFSDLTHSILSTTHHHHRRLASLLSSPTLFSLTLHHLHTLSLPQKTLLIARHLLSSLHLLTATSPSPSTTTRQRDLDAALLLLLLCETHNHNPHALEAPFSQWRVNLSTIFSDSLLTFSFAPLGACMGSPVLIPFVETVTRCWRLVGTLDCGGGKELDEVAASAAAVVALPSVEVRAGGRECVICREEMRIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKTAAKYS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00768 269 SMART ring_2 201 241 IPR001841 -
Spst7g00768 269 CDD RING-H2_PA-TM-RING 200 242 - -
Spst7g00768 269 SUPERFAMILY RING/U-box 194 247 - -
Spst7g00768 269 Pfam Ring finger domain 200 242 IPR001841 -
Spst7g00768 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 248 IPR013083 -
Spst7g00768 269 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Spst7g00768 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00768 Spst-Chr7 7952519 7953328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00768 1 265 C3H Transcription Factor Family AT5G02750 52.143 3.11e-84 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00768 K11982 - gmx:100810879 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00768 7 7952519 7953328 Spst7g00768 7 7952519 7953328 ECH