Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00754 ATGGGTAACGCCCATGGACACCGTCATCGCAAACACCCTAACTCCGTTCCTCCACCCCATAAATATGACCATCCCCCACCGTTCCCAACCCCACCACCACCCATATCCAATTCCAACATGCTGTCTCTCCCTTACACCCACGTCGACACCACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGCTATGCCGTCGGCGGCCTCCACGGTCCCCTTCACCGCGTCACATCGCTCGCAGATGATGGACCGGGGTCACTGCGTGAGGCATGTCGTCGAAAAGAACCGTTGTGGATTGTGTTTGAGGTGTCCGGCACCATTAATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAAACCATCGATGGTCGTGGCCAGAGGATTAAACTCACCGGAAAAGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAACACATATGGATTGATCGTTGTACGCTCGCTGATTTTGATGACGGGCTTATAGATATCACACGAGAAAGCACAGACATTACTGTCTCAAGGTGTCACTTCTATCAGCATGACAAAACCATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTATGCGAAAGTGCATCTCTACAATAATTATATCAGAAACTGGGGCATATACGCTGTGTGTGCTAGTGTGGAAGCCCAGATTTTCTCACAGCATAATATCTATGAAGCGGGCCAGAAGAAGGTGGCTTTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTACCATAAGGTCTGAAGGAGACTTATTCTTAAACGGTGCTCAACCAGGGTTAATGACTGAGAGTGGTGAGTGCATCATGTTTCACCCCAGTGAACACTATCCCTCATGGACAGTGGAAGCCCCTACAGATGATCTAAAACACATTCTTCAACACTGCACTGGATGGCAATCCGTTGCTAGACCAGCAGATCAAACACTATGA 1107 0.5032 MGNAHGHRHRKHPNSVPPPHKYDHPPPFPTPPPPISNSNMLSLPYTHVDTTLRALAAQAEGFGRYAVGGLHGPLHRVTSLADDGPGSLREACRRKEPLWIVFEVSGTINLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLADFDDGLIDITRESTDITVSRCHFYQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRYAKVHLYNNYIRNWGIYAVCASVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGATGTIRSEGDLFLNGAQPGLMTESGECIMFHPSEHYPSWTVEAPTDDLKHILQHCTGWQSVARPADQTL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00754 368 SMART amb_all 85 283 IPR002022 -
Spst7g00754 368 MobiDBLite consensus disorder prediction 1 15 - -
Spst7g00754 368 MobiDBLite consensus disorder prediction 1 36 - -
Spst7g00754 368 PANTHER PECTATE LYASE 18-RELATED 48 317 IPR045032 GO:0030570
Spst7g00754 368 MobiDBLite consensus disorder prediction 19 36 - -
Spst7g00754 368 Pfam Pectate lyase 113 276 IPR002022 -
Spst7g00754 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Spst7g00754 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Spst7g00754 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Spst7g00754 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Spst7g00754 368 Gene3D - 44 351 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00754 Spst-Chr7 7810827 7813250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00754 80 365 Polysaccharide Lyase AT3G55140 79.021 4.13e-176 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00754 K01728 - gmx:100814368 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00754 7 7810827 7813250 Spst7g00754 7 7810827 7813250 ECH