Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00742 ATGAAGAGACAGAGAGAAGAGAACCTAGATTTCGCAAATTGTCTAATGCTACTCTCTCACGATCATCCCAGAGAAATCAAACCCCAAAAACTTTTAGGCCCTGTTGAATTTGAGTGCAGAACCTGCAACCGCAAGTTCTCTTCTTTTCAAGCCCTTGGTGGCCACAGGGCGAGCCACAAGAAGCACAAACAAGACGTGAAAGAAGAGGACGAAATTCATAAGCCCAAAAAGCACGAGTGCTCCATTTGTGGGCAACAATTCTCTCTGGGTCAAGCTCTGGGAGGACACATGAAAAAACACAGAATTGCCCTAAACGAAGCGTTTTTTTCTTCAGTAAACCAGGTTGTGGCAAAAGTCCCTATTCTTGAAAGGTCCAATAGTACGAGGGTTATGTGCTTGGACTTGAACCTGACCCCTCTGCAGAATGACTTGAAGTTACTGTTTGGAGACAAAGCACCCAAAGTTGATTCCTTCGTCGTCTGA 483 0.4493 MKRQREENLDFANCLMLLSHDHPREIKPQKLLGPVEFECRTCNRKFSSFQALGGHRASHKKHKQDVKEEDEIHKPKKHECSICGQQFSLGQALGGHMKKHRIALNEAFFSSVNQVVAKVPILERSNSTRVMCLDLNLTPLQNDLKLLFGDKAPKVDSFVV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00742 160 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Spst7g00742 160 Pfam C2H2-type zinc finger 78 102 - -
Spst7g00742 160 Pfam C2H2-type zinc finger 37 61 - -
Spst7g00742 160 SUPERFAMILY beta-beta-alpha zinc fingers 37 100 IPR036236 -
Spst7g00742 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Spst7g00742 160 Gene3D Classic Zinc Finger 34 100 - -
Spst7g00742 160 SMART c2h2final6 37 59 IPR013087 -
Spst7g00742 160 SMART c2h2final6 78 100 IPR013087 -
Spst7g00742 160 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Spst7g00742 160 PANTHER ZINC FINGER PROTEIN ZAT5 4 143 - -
Spst7g00742 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00742 Spst-Chr7 7656329 7656811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00742 1 156 C2H2 Transcription Factor Family AT2G37430 45.198 1.10e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g00742 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00742 - - gmx:100793243 244.588