Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00725 ATGGCGGCAGCGTCGCGGCGGCTACGGGACCTCCAATCCCAGGTGGCGAACAAGATCTGCGTCGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCTGTCTCGTACGGCGTCTTCATGTGTCTGGAGTGCTCCGGTAAGCACCGTGGCCTTGGTGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGAGGGAACGATAAGCTCAACGCCTTTCTCGCTCAGTACTCTATCCCCAAGGAGACAGACATAGTCACTAAATACAATACCAACGCCGCTGCCGTTTACCGCGATCGGATCCAGGCAATTGCTGACGGCCGTCCCTGGCGCGATCCACCGGTCGTTAAGGAAAACCTCGCCGGCAGCAAGGGGAAGCCACTGCTGACGCAGACGCAAAGAGCTGGAAACGGAGGATGGGACGATTGGGACAACGAGGGGATTTCGGCGGATATCCGGAGCAGGTCGACCGGGGACTTCAGGAACTTGAACGGGGCCGGCGCGCCGGCGAGGTCGAGGTCGACGGAGGACATCACGCGATCGCAGCTGGAGGCGTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGAGTCGCGGCCGGAGGGGCTTCCGCCATCGCAGGGAGGGAAGTACGTAGGGTTCGGATCCAGTGCGCCCCCTCAGAGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGGATTGGGAAATTGTCTTTGGTTGCTGCTTCTGCTGCTCAATCTGCGGCTCATGTTGTTCAGGCTGGCACGAAAGAGATCACATCTAAGGTCAGGGAAGGTGGTTATGATCACAAGGTCAATGAAACTGTCACTGTTGTCAGTCAAAAGACATCAGAAATTGGACAGAGAACTTGGGGCATAATGAAAGGAGTTATGGCCATGGCCTCCCAGAAGATCGAGGAGTACACTAGAGATGATCCAAACTGGAAGACTAATAACTGGCAACGAAATGAGAGCGAAAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGATCGAATTCTTCTCTTGGAAGAGAACAATCTTCATCAGGGCAATATATAAGTCACAGCTCAAGCTCTGCGGAGGATTGGGATCACCACCGAGATAGCAGGAAGGAAGATCGTGCGAAAGGATCAACTCCTTCTCATTCATCAGGTGGACAGTCTAGTACCTACAACTCAAGCTCTTGGGATGATTGGGAACACACAGATTCTAGGAAGCAACAACCAGCTAAAAGATCAGCTCCCCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAGTTTTTACCAAGGTGAATCGAATAAGAAAGGTGCTGGTCATAATGGAAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTATGA 1455 0.523 MAAASRRLRDLQSQVANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLAGSKGKPLLTQTQRAGNGGWDDWDNEGISADIRSRSTGDFRNLNGAGAPARSRSTEDITRSQLEASAANKESFFARKMAENESRPEGLPPSQGGKYVGFGSSAPPQRRNDAQNDYLSVVSQGIGKLSLVAASAAQSAAHVVQAGTKEITSKVREGGYDHKVNETVTVVSQKTSEIGQRTWGIMKGVMAMASQKIEEYTRDDPNWKTNNWQRNESERNGYYQDFNQQNKGSNSSLGREQSSSGQYISHSSSSAEDWDHHRDSRKEDRAKGSTPSHSSGGQSSTYNSSSWDDWEHTDSRKQQPAKRSAPHNNDDWAGWDNAKDDGFDSFYQGESNKKGAGHNGKSDGTWTEGGFL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00725 484 CDD ArfGap_ArfGap1 4 118 - -
Spst7g00725 484 MobiDBLite consensus disorder prediction 402 420 - -
Spst7g00725 484 MobiDBLite consensus disorder prediction 421 436 - -
Spst7g00725 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Spst7g00725 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 401 IPR044519 GO:0005096|GO:0016192
Spst7g00725 484 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Spst7g00725 484 MobiDBLite consensus disorder prediction 352 381 - -
Spst7g00725 484 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Spst7g00725 484 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Spst7g00725 484 MobiDBLite consensus disorder prediction 352 484 - -
Spst7g00725 484 MobiDBLite consensus disorder prediction 185 199 - -
Spst7g00725 484 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Spst7g00725 484 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Spst7g00725 484 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Spst7g00725 484 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Spst7g00725 484 MobiDBLite consensus disorder prediction 167 241 - -
Spst7g00725 484 MobiDBLite consensus disorder prediction 382 401 - -
Spst7g00725 484 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00725 Spst-Chr7 7253028 7256222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00725 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 7.42e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00725 K12492 - gmx:100806519 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00725 7 7253028 7256222 Spst7g00725 7 7253028 7256222 ECH
Spst1g02998 1 38548005 38550897 Spst7g00725 7 7253028 7256222 PCT