Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00712 ATGGTATATGCTGCATCTATATTCTTATCTCCATTGGTCTCACTTCAAAAGGACGTCGATTTTGAATCTCCGGAAGCTAAAAAGCAAGGGCGTGGTTCTACATCCACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGAAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCCATGATGTTCCCTGGAATGCAGCAGTATATGCCGCCGATGGGAATGGGGGTTGGCATGGAAATGGGAATGGGAGTGAACAGACCGGTAATGCCATTTCCGAATATGATAGCTAGTTCAACATTGCCAGCAGCAACTGCAGCTGCTCATTTAGGACCGAGGTTCCCTATGTCTCCTTTCCATATGCCCCATGTTCCTGTACCTGATTCATCCAGAATGCAAGCACCAAATCAGTCAGATAATAATATCCTTAACGCACTTGGTACACAAGATCCAGATCAATTACGTATCCCAAACTTCACAGATCCTTATCAGCAATATCTCAGCCTTCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCTAGTACCAGTAGTGGTAAAGAGAATCCAGAAAAACATCATTCAGTGCTGCTCCCTATTGGATTGCTGGTACCCGTAACTGTCACGTTAAGCTTTTGCGGCACCTGGACAAAAGCTGCTAAGCGGTGTACTAGGCGAGAGCTAGTAACAAGCTAA 849 0.4429 MVYAASIFLSPLVSLQKDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGMQQYMPPMGMGVGMEMGMGVNRPVMPFPNMIASSTLPAATAAAHLGPRFPMSPFHMPHVPVPDSSRMQAPNQSDNNILNALGTQDPDQLRIPNFTDPYQQYLSLQQVQLQLMQAMNQPNVSKPSTSSGKENPEKHHSVLLPIGLLVPVTVTLSFCGTWTKAAKRCTRRELVTS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00712 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 118 IPR036638 GO:0046983
Spst7g00712 282 Gene3D - 35 98 IPR036638 GO:0046983
Spst7g00712 282 MobiDBLite consensus disorder prediction 21 53 - -
Spst7g00712 282 FunFam Basic helix-loop-helix transcription factor 35 98 - -
Spst7g00712 282 Pfam Helix-loop-helix DNA-binding domain 44 90 IPR011598 GO:0046983
Spst7g00712 282 SMART finulus 46 95 IPR011598 GO:0046983
Spst7g00712 282 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 235 IPR031066 -
Spst7g00712 282 CDD bHLH_AtPIF_like 40 103 IPR047265 -
Spst7g00712 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Spst7g00712 282 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00712 Spst-Chr7 7052648 7055797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00712 22 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 44.271 1.40e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g00712 HLH 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00712 - - gmx:100792121 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00712 7 7052648 7055797 Spst7g00712 7 7052648 7055797 ECH
Spst1g03010 1 38693765 38699083 Spst7g00712 7 7052648 7055797 PCT