Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00686 ATGGCTACTCAAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCCTGGGAACCCAACAAGCCATTGACCATCGAGGACGTTCAGGTGGCTCCGCCGCAGAATGGAGAGGTCCGGATAAAAATTCTCTACACTGCTCTCTGTCATACCGATGCTTACACGTGGAGCGGCAAGGATCCAGAGGGCCTTTTTCCATGTATACTTGGTCATGAGGCTGCCGGGATTGTGGAGAGTGTTGGTGAAGGTGTTACTGAAGTTCAGCCTGGTGATCATGTGATCCCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGCAAATCTGGGAAAACCAATCTGTGTGGCAAAGTTCGAGCTGCCACTGGAGTAGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTATTAATGGAAAACCCCTCTATCATTTCATGGGAACCTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCGAAGATTGACCCCAAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGCGGTGTTCCAACTGGGCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAACCGGGGTCAATTGTTGCTATTTTTGACCTTGGAACTGTTGGGCTTGCTCAGAGGGTGCAAAAGCTGCTTGGCATAGATATTGATAGCAAGAAGTTTGAACGAGTCACCGAATTTCTTAATCCAAAAGAACATGACAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGTGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGATCTGCTTTGGAATGCTGCCATAAGGGTTGGGGGACATCAGTTATTGTGGGGGTTGCAGCATCAGGTGAGGAAATATGTACTCGACCTTTCCAGTTGGTGACTGGGCGTGTATGGAAAGGAACAGCATTTGGTGGCTTCAAGAGCCGATCACAAGTGCCTTGGCTCGTAGAAAAGTACATGAACAAGGAAATCAAGGTTGATGAGTACATCACCCACAGTTTGGCTCTTGCAGAGATCAATAAGGCATTTGATCTCATGCATGAAGGAGGATGTCTCCGTTGTGTTCTTGCGATGCATGAGTGA 1104 0.4728 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQNGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSINGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFDLGTVGLAQRVQKLLGIDIDSKKFERVTEFLNPKEHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGEEICTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYMNKEIKVDEYITHSLALAEINKAFDLMHEGGCLRCVLAMHE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00686 367 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 230 - -
Spst7g00686 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Spst7g00686 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 329 IPR036291 -
Spst7g00686 367 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Spst7g00686 367 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 308 - -
Spst7g00686 367 Gene3D - 13 360 - -
Spst7g00686 367 PANTHER ALCOHOL DEHYDROGENASE 5 363 - -
Spst7g00686 367 SUPERFAMILY GroES-like 3 198 IPR011032 -
Spst7g00686 367 Pfam Zinc-binding dehydrogenase 223 315 IPR013149 -
Spst7g00686 367 CDD alcohol_DH_class_III 8 363 IPR014183 GO:0006069|GO:0008270|GO:0051903
Spst7g00686 367 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 365 IPR014183 GO:0006069|GO:0008270|GO:0051903
Spst7g00686 367 SUPERFAMILY GroES-like 314 363 IPR011032 -
Spst7g00686 367 Gene3D - 182 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00686 Spst-Chr7 6786358 6789977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00686 10 319 Monolignol Biosynthesis Gene Families AT1G72680 26.300 5.32e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00686 K00121 - gmx:100793008 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00686 7 6786358 6789977 Spst7g00686 7 6786358 6789977 ECH
Spst1g03029 1 38910731 38913304 Spst7g00686 7 6786358 6789977 PCT