Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00674 ATGTCAACTGTGTCCAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCTTGCCCAGAAGAGTCTGAGCTTGAATTGGGCCTTGGGTTGAGCATCTCTGGCCCTTGTAAGTCTCACCACCATGTCCATGCTCATGCTCCTTCTCCTTATGCCAGGATTTTCACTGCTAAGGATTTTCCTTCTTCAGCATCATCCTCGCCTTCCTCTTCTTCCTCTTCATCTCCCAACATGACTACTGGCACCAAGAGAACTGCTGATTCTCTTGTTGCCAATAATCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTACAACAGCCATGCAAAATTAACTGAAGTATTCGACTCTGTGACTGAGAAGAGCAAGGGCAATAATACTGTGTCAAGGAAGAGTGCTGACAATGGCAATGATAATAACATTAATGCCAAAGAGAAAAGACACCTCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGATGGGATACCTATTGGCAGGAAGATTGATTTGAGCGCTCATAGCTCATATGAAACCTTAGCGCAAACATTGGAGGATATGTTTAATGAATCAACTACTGTCACCATTTGCAGAGGATCAAATGGTGAGGATCATGGAATTATTATTGGAAGAGAAAGGCACTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTCAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAACATCAGGCAGAAATGCAAGCCCATGTAG 858 0.4429 MSTVSKDDNLVLSSEDSSCPEESELELGLGLSISGPCKSHHHVHAHAPSPYARIFTAKDFPSSASSSPSSSSSSSPNMTTGTKRTADSLVANNRPSQVVGWPPLRTYRVNSYNSHAKLTEVFDSVTEKSKGNNTVSRKSADNGNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKIDLSAHSSYETLAQTLEDMFNESTTVTICRGSNGEDHGIIIGRERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIRQKCKPM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00674 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 269 IPR003311 GO:0005634|GO:0006355
Spst7g00674 285 SUPERFAMILY CAD & PB1 domains 154 262 - -
Spst7g00674 285 FunFam Auxin-responsive protein 154 274 - -
Spst7g00674 285 ProSiteProfiles PB1 domain profile. 159 266 IPR000270 GO:0005515
Spst7g00674 285 MobiDBLite consensus disorder prediction 127 146 - -
Spst7g00674 285 Gene3D - 151 276 - -
Spst7g00674 285 MobiDBLite consensus disorder prediction 1 18 - -
Spst7g00674 285 MobiDBLite consensus disorder prediction 127 152 - -
Spst7g00674 285 MobiDBLite consensus disorder prediction 1 23 - -
Spst7g00674 285 Pfam AUX/IAA family 62 273 IPR033389 -
Spst7g00674 285 MobiDBLite consensus disorder prediction 60 95 - -
Spst7g00674 285 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00674 Spst-Chr7 6673807 6677867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00674 152 283 B3 DNA Binding Superfamily AT1G59750 33.582 1.56e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst7g00674 AUX_IAA 1.2e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00674 K14484 - gmx:100779400 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00674 7 6673807 6677867 Spst7g00674 7 6673807 6677867 ECH
Spst1g03050 1 39104569 39120625 Spst7g00674 7 6673807 6677867 PCT