Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00648 ATGGAGGAAGAAGAGGATCAAATTTTGCTCTCTAGTTTGGGCGTGAAGTCTGCCAATCCCGAAGACATTGAACGCGATGTGTTGGAAAAGGCTACTAGGAATGATTCAGTGACAGGTACTGAAGTTGAAGGTAGTGCCAAGGAAGAATGTTCTGATTTGCCTGAAGATGTTGATCCATCAGCTAATGCTAAAGCTGAACTTCACCACAAGTTGAGAGCTGTACTATTCGAAATTGATGCAGTTGCCTCCACCGTTGAGCAGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGGTGCTGGTGAGGACGGATTGGTGTCAGGGATTGCTGAGGGCGATTCCTCTGACAAGTCAAATCTTCAGTGTGTTCTTGCTGCCGATAGACTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAAAAAGAGCTTTTGAATTTGTCTAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTTAGTTTAGTTAGGGAAGAGCGGAAGCCAAAGAGGAAGGTTACAGAAGATAAAAAATCAAATAAAAGCAAGGGAAAGCGAGTTAAGAAGGTTTCCTTTGATGATGATGTTGATTTTGATACTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGGAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGACGTTATCAACAACCAGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATGCTGGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCGAAGTCCATGTATGAGGCAGCAAGATCTCGCCCAACCACTAAGCTGCTTGAGCCTGAAGATGCACCAAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAAGAAACCACTACAATGTTCCAAACCTCTAGATAGAGAGGTGGAGCTGAATAAAGATTCAAAAAGGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCGTGTGAGGACACACGTATGGAAGAAAGTGAAAACGCAGATGGCTGCTTGGATGCTCCCAGTTTTGAAAATTTAGAAGAACAAGACATTGAGCTTGATGATCATGAACCTTATGTAACATTAGAAGGTGGGCTGAAAATTCCTGATAAGATATTTGACGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCGTTTCTTGGTGCATTGCACTTTAGTGGTATGTACAAACCCAGCATTATTGTGTGCCCAGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTATCCAAAATTCCATGTAGAGCTTTTACATGATTCGGCTCAAGATTCTGTTCCTAGAAAGAAGCGAGCTAAATCTGAAGAAACAGACTGTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAATGTGTGCCATCTAGAAACACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCGGAATCCGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTGGTTTGCAAGCAGCTACAAACTGTACATCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTTTTGCCTATATTTGAAGCGGAATTTGCAGTTCCTATAGCAGTTGGTGGATACGCAAATGCTTCACCTTTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGAAGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACTGAGCATGTTCTATTTTGCAGCCTTGCACCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTAGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGTATTGATGTCATGCGCAAGATCTGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCGGAGCGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTTCTTAATGTTTGGAAGGAACAGGGTCACCGAGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATATTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATAGATGAATTTAATGCTTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGACAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGAGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGTGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACACTTTCTTACGAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACGCTTAATGTGGATGGAGAAACTGGGTCAACTGAAACATCAAATATTTTTGGTCAAATATCTGAAGAAGTAAATGTCATTGGGACACAGAAAGGAAATAAGGATAAGTATAAACATAGCCAAACTGCCAAACTGGATTCTGAAGATGTTGCGGTTAGTAATGATGACAAGTCAGAGAGAGGATCTTTGGAAGGAAAAGGGAAAGAGAAGGTTGAACACAATAATGGGGTTGATGATGAAACAAATATATTGAAAAGTCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTAATCATGAATGCCCAAGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCATTACGTCAGTCACGAATTCTCAGAAGCCATGATAGTGTATCTGTTCCCACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTAAGGCGGAAGTTTGGTTCAACTGTAAATGCGCAGTTGGTAAATAAAAGCAAGGTATCTGATGAATTACCCAGCAAGGGAACTACCAAGTTAAATGGATTCGCTGCTGGTGCATCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCTGTCGAACTATTGGCTCAAATTCGAGGTAAACAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAGTCTGGTATATTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTCCCAGGTTACCGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGTACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCTAGCATAGTTCAATATTTCAAGGAACGTATTCCCTCAAAAGATCTTGCCTTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCTATTGGGTTCTAAAACCAGACTATCAATTCTGA 3687 0.4169 MEEEEDQILLSSLGVKSANPEDIERDVLEKATRNDSVTGTEVEGSAKEECSDLPEDVDPSANAKAELHHKLRAVLFEIDAVASTVEQLRNVENNEECSGAGEDGLVSGIAEGDSSDKSNLQCVLAADRLRSLKKTKAQLEKELLNLSKDDASKSVEDEQLIFSLVREERKPKRKVTEDKKSNKSKGKRVKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRYQQPETSTSHNAAEEENAGDLAAASVERAAKSMYEAARSRPTTKLLEPEDAPKLDAPTFPFRRLKKPLQCSKPLDREVELNKDSKRKKRRPLPGRKWTKRVSCEDTRMEESENADGCLDAPSFENLEEQDIELDDHEPYVTLEGGLKIPDKIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAQDSVPRKKRAKSEETDCESNSSSDNDYEKCVPSRNTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPIFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLAPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENILTTSGHIYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNVIGTQKGNKDKYKHSQTAKLDSEDVAVSNDDKSERGSLEGKGKEKVEHNNGVDDETNILKSLFDANGIHSAMNHDLIMNAQDEEKMRLEEQASQVAQRAAEALRQSRILRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTVNAQLVNKSKVSDELPSKGTTKLNGFAAGASAGASAGKALSSVELLAQIRGKQEKAIGAGLEHQSGILSSSTNQARSVDVRSSQVTASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPDYQF 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00648 1228 MobiDBLite consensus disorder prediction 480 494 - -
Spst7g00648 1228 CDD DEXHc_ERCC6 393 603 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 1 59 - -
Spst7g00648 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Spst7g00648 1228 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Spst7g00648 1228 CDD CSB_WHD 1161 1227 - -
Spst7g00648 1228 SMART ultradead3 389 621 IPR014001 -
Spst7g00648 1228 FunFam DNA excision repair protein ERCC-6 661 940 - -
Spst7g00648 1228 PANTHER SNF2/RAD54 FAMILY MEMBER 159 1210 - -
Spst7g00648 1228 Gene3D - 660 966 IPR027417 -
Spst7g00648 1228 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Spst7g00648 1228 Gene3D - 367 653 IPR038718 -
Spst7g00648 1228 CDD SF2_C_SNF 736 861 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 45 59 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 480 506 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 273 294 - -
Spst7g00648 1228 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Spst7g00648 1228 Coils Coil 1006 1033 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 312 333 - -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 935 977 - -
Spst7g00648 1228 SMART helicmild6 767 850 IPR001650 -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 236 255 - -
Spst7g00648 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 654 IPR027417 -
Spst7g00648 1228 Coils Coil 122 149 - -
Spst7g00648 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 913 IPR027417 -
Spst7g00648 1228 MobiDBLite consensus disorder prediction 934 977 - -
Spst7g00648 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00648 Spst-Chr7 6492583 6498915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00648 386 903 RAD5 or RAD16-like Gene Family AT1G02670 23.451 2.11e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst7g00648 SNF2_N 1.3e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00648 K10841 - gmx:100820025 2111.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00648 7 6492583 6498915 Spst7g00648 7 6492583 6498915 ECH