Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00641 ATGGGTCTTAGAGACATTGGTGCTTCACTTCCCCCTGGGTTTCGCTTTTACCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTACAAAAAGATCACAAATGAAGAAGTTCTCAAGGGTACCTTGATGGAAATTGACTTGCACACTTGCGAGCCATGGCAACTCCCAGTTTATGGTAGCTATGAACTGTATATACACCCAAATGGATGGGTGTGA 216 0.4444 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPVYGSYELYIHPNGWV 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00641 71 Gene3D NAC domain 19 68 IPR036093 GO:0003677|GO:0006355
Spst7g00641 71 ProSiteProfiles NAC domain profile. 10 71 IPR003441 GO:0003677|GO:0006355
Spst7g00641 71 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 64 - -
Spst7g00641 71 SUPERFAMILY NAC domain 8 64 IPR036093 GO:0003677|GO:0006355
Spst7g00641 71 Pfam No apical meristem (NAM) protein 11 59 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00641 Spst-Chr7 6407930 6408745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00641 1 56 NAC Transcription Factor Family AT4G28530 56.944 3.77e-20 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst7g00641 NAM 6.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00641 - - gmx:100783645 122.094