Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00638 ATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGATTGGGGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGATGTCATGGACCACCAAATCCCGTCTGATGTTAATCTATGTAAAGAGTGTGAGGAATTGGATACACGTGTTAACGAAGCTAGAGATTTCATTGAAAGATGGAGTCCAAAGATGAGCAAGATTCACAGTGTTCTGCACGGTGGTACATTGTTGATCAAGTTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCGTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATTGCAATGGTCTACATAGAAGAAGCACTGAGAAACCAAAGAGATCATATTGAACCATGCAAGGAGCACCTCAAGGAAATTATCGAGCTACTTAAATTGACATCAAATCAGGAGCTCTTCAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAACACGGAAGCCAATAAAATGATAGCGGACATTGAAGAAATTAATGAAATTGTGAATCTTGTTCGCAGTTTGCGGGATTATGTGATGAAAACTGATTGCCCTGTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCTTTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGACTTATTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCACAATAAATCTGCCTGTATCACATCCCCCTCGGATAATTTATTGCCACAAGATTTAACTCATGATTGCTGTGTTGGGTCTTTATCTAGTAGCAATTCCATTTCAAGATCATCTTTTCAAACTGAAAATGCATTTGAAAAGAATAAGGACGATAACTCTTTCAGATTATCTGGAGAATACAATGGATGCCAGAGTGGAGCAGCTGAAAAGTGTGAACAACAGTCCCCAAATACTCACAGTAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCACTTGCACTTTCAAAAGATGCGTCGGGGATATCCAATAGGCATCAAAATGTGAAGGTGCTGTCTGGAGAAATCACAAATATCTGTCCTTCTCCTGGTAACAAACAATCAGGGATATCTCCTCCGTCGTTTGCAAAGCCATTTCTAAACCCTGGATCAAATGTGAGATTGTTGGACAATGGAAATAATCAGCATAATAATAATAATAGTCCTTCAAGATTTAATTCCCATTCTGTTTTCAACTCCACATCAGATGAATTGACATCCTCATCTCATGTCATTAGATTGATTGAAGACCTTCACAGCCAATCAGTTGAAACGCAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACCAGGAAAACCGTATCATTGTAGGGAAGTGTGGGGCTGCCATGCCTTTGCTTTCATTGCTATATTCAGATATGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTGAACTTATCAATTAATGAAGAGAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATAGTGCCAAGGAGAATTCTGCGGCAGCACTATTCAGCCTCTCAGTAATTGAGAACAATAAGGCAAGAATTGGCCGTTCTGGAGCGGTTAAAGCTTTGGTTGATCTTCTTGCCTCAGGGACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAGGCTGGAGCAGTGAAATTTCTGGTTCAGTTAATGGACCATGCTGGTGGAATGGTAGATAAGGCTGTTGCTCTTCTCTCAAACCTGTCAACAATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGTATCCCCTTGCTTGTTGAAGTTGTTGAGTCAGGTTCCCAAAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCTAAGTTCTGTAATCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTAGTTGCATTGTCAATATCTGGTACACCCAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGCAATCAGCGGGAAGTAGCTGCTTCTGGGAAGGGGAAATCATGA 2295 0.41 MKPMPFQKICNNMIGVLKRLKPVLDDVMDHQIPSDVNLCKECEELDTRVNEARDFIERWSPKMSKIHSVLHGGTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQHYIQELQCLKKEIAMVYIEEALRNQRDHIEPCKEHLKEIIELLKLTSNQELFKESIAVEKERLNTEANKMIADIEEINEIVNLVRSLRDYVMKTDCPVVKSGLSIPPYFLCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLIHTNLIPNYTVKAMIATWCEENNVKLSGNSEHNKSACITSPSDNLLPQDLTHDCCVGSLSSSNSISRSSFQTENAFEKNKDDNSFRLSGEYNGCQSGAAEKCEQQSPNTHSRSESFSSSISSTDCALALSKDASGISNRHQNVKVLSGEITNICPSPGNKQSGISPPSFAKPFLNPGSNVRLLDNGNNQHNNNNSPSRFNSHSVFNSTSDELTSSSHVIRLIEDLHSQSVETQTTAAEELRLLTKHNQENRIIVGKCGAAMPLLSLLYSDMKVTQEHAVTALLNLSINEENKALIMEAGAIEPLIHVLKTGNDSAKENSAAALFSLSVIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVQLMDHAGGMVDKAVALLSNLSTIPEGRLEIARERGIPLLVEVVESGSQRGKENAASILLQLCLHSSKFCNLVLQEGAVPPLVALSISGTPRAKEKAQQLLSHFRNQREVAASGKGKS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00638 764 SUPERFAMILY RING/U-box 211 286 - -
Spst7g00638 764 FunFam RING-type E3 ubiquitin transferase 209 285 - -
Spst7g00638 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 286 IPR013083 -
Spst7g00638 764 Coils Coil 167 187 - -
Spst7g00638 764 PANTHER U BOX DOMAIN-CONTAINING 5 751 - -
Spst7g00638 764 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Spst7g00638 764 Pfam Armadillo/beta-catenin-like repeat 507 546 IPR000225 GO:0005515
Spst7g00638 764 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Spst7g00638 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Spst7g00638 764 CDD RING-Ubox_PUB 213 265 IPR045210 -
Spst7g00638 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Spst7g00638 764 SMART arm_5 589 629 IPR000225 GO:0005515
Spst7g00638 764 SMART arm_5 670 710 IPR000225 GO:0005515
Spst7g00638 764 SMART arm_5 630 669 IPR000225 GO:0005515
Spst7g00638 764 SMART arm_5 548 588 IPR000225 GO:0005515
Spst7g00638 764 SMART arm_5 507 547 IPR000225 GO:0005515
Spst7g00638 764 MobiDBLite consensus disorder prediction 442 466 - -
Spst7g00638 764 Pfam U-box domain 212 283 IPR003613 GO:0004842|GO:0016567
Spst7g00638 764 Gene3D - 553 759 IPR011989 -
Spst7g00638 764 SUPERFAMILY ARM repeat 477 750 IPR016024 -
Spst7g00638 764 SMART Ubox_2 215 278 IPR003613 GO:0004842|GO:0016567
Spst7g00638 764 FunFam RING-type E3 ubiquitin transferase 462 756 - -
Spst7g00638 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Spst7g00638 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 682 IPR000225 GO:0005515
Spst7g00638 764 MobiDBLite consensus disorder prediction 358 377 - -
Spst7g00638 764 Gene3D - 437 552 IPR011989 -
Spst7g00638 764 ProSiteProfiles U-box domain profile. 211 285 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00638 Spst-Chr7 6338769 6341931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00638 5 764 U-box Gene Family AT3G54790 52.995 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00638 - - gmx:100800949 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00638 7 6338769 6341931 Spst7g00638 7 6338769 6341931 ECH