Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00635 ATGCCGTCTCTCCTCTCTCCGGGGAAAATCCACTGCCTGGAGGTGGAGAATTTTAAGTCCTACAAGGGCTTTCAAGTCATCGGTCCCTTCTACGATTTCACCGCCATCATCGGTCCCAATGGGGCTGGCAAGTCCAACCTCATGGATGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGCGGTGCGCAGCTCAAGGACCTCATATACGCCTTCGACGACCGCGAGAAGGAGCAGAAGGGTCGCCGAGCCTTCGTCCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAGATTCACCCGCACCATCACGAGCTCCGGCTCCAGCGAGTACCGCATCGACGACACCCTCGTCAACTGGGATACCTACAACAACAGGCTCAAGTCCCTGGGCATTCTTATCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTTGAATCCATTGCGTCGAAGAATCCCAAAGAGCTCACTGCAATGGTGGAGCAGATATCTGGCTCAGACGAGTGCAAGAGGGACTATGAGCAGTTTGAAGAGGAAAAGGGCGCTGCTGAAGAAAAATCAGCGCTTGCTTATCAGAAGAAAAAGACTGTGGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAAGAAGAAGCGGAGAAGCATCTCCGCCTGCAACAAGAACTGAAATCTATGAAGAGAGAACATTTCTTGTGGCAGTTGTTTAATATACATAATGATTATGTTAAAACAATTAAGGATCTTGAAGATGAGGAAAAAAGTCGGGAAGGTGTTGTTAAAGAACTAGAAAATTTTGAACATGAAGCTAGTAAAAAGAAAAAGGAGCAGGCCAAATATCTGAAAGAGATTGCACTACGGGAAAAAAGAATTGCTGAGAAAAGCATAAAGCTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCACTTCAAAGATTAAAAAAGGGAAGAAAGAACTTGATAAAAAAAGGGTTGAACGGGCAAAGCATGATACTGATATAGCATTACTACAGAAAGGCATCCAGGATCTTACAGCCAAAATGACAGAACTTCAGGAAAAGGGAAGGGATGTTGATGATGAGCTTGATTTGCAAGGCAATGACTTGGATGAGTATTTCCGAATAAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTCGATAGGAAACTCAATGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCAGAATTGAAATCACAGGAAGAACAGATGCGAGGAAGACTTGAAAAAATTCTTAATAATTCTGCAAACAATAGAACTGGCCTTGAAAACTTGAAAAAAGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAACTTGAAGCTAAAGATTGGTGAATTAGAAAATCAACTACGGGAATTGAGGGCTGATAGATATGAGAATGAGAGGGACGTTAGATTGTCTCAGGCTGTTGAGACTCTGAAACGCCTATTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACTGAAGAAGTACAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGACAAGGAATCGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTAGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGAACAGCTAAACTGATTTTTGATTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGATGATCTCGAGGAGGCCAAAATTTTAAGCTGGAGTGGCGAGAGGTTTAAAGTGAACGTTGTGCTGTGTAATTTGAATCGCTTAGTTGTAACTGTGGACGGAATTCTGCTGACAAAATCTGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATAGAAGGACTTAATAAAAAGAAAGAGCAGTATGAAGTAGAGGTGGAATCGCTAGGATCAATAAGAGATATGCATCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAGAAGCATAGTCTTGTTCAGTGTTATCGAAAAACGGCCATGGTGGTACTATGGTGGAAATTAGAAGCAGAATCAGGTGGTGGCAAAACAGGTTTGCATGGTGGCCGCTTTGGCTGTTGCAACCACAGCCGTGCAAACTGCATTGAGAGGTTATTTTATAATAGCCACGAACTAGCACTTCTCCCTTACCGAAGAGATGAGTTGCCGCCACTGATGTTGTCCCCATTGATCAAGGTAGAATGGGTTGTGCAGAAGGTTGTGCTTGGGATTAAGGTTGTGCAAGGGTTAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAGCTGAAGAAGGTGTTAAATGATGCTGTTAACAAGAGCAATGCAGAAATACGTAAGCTTGAGAAAAGGATAAATGAAATTACTGATAGGATATACAGAAACTTCAGCGAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATCGACTCAAGGCTGCACAAAATATAGCAGAGGAGAGGCTGAACTTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCTAGAATTGGAAGCTTCTCTAAGTGCATTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAAGCCGCAGCGAAGTTAACTGCTGAGAAGGCTACTGAAGAGGTTAACCAGTTAAAGGAAGAAGTGAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCATCCACAACAAACATATCCAAACTTAATCGTCTGATACATTCTAAGGAGGCACAGATTGATCAGTTAAATGTGCAAAAGCAGGAAATATTAGAAAAATGTGAACTTGAACAGATTAACCTCCCGATTATACCAGATCCCATGGATACTGATAGCTCAGTGCCAGGCCCATTTTTTGATTTTGACCAACTTAGTAGGGCACTGAAAGATAAGAGACACTCAGACAGGGATAGAATTGAGTTAGAGTTTAAGCAAAAAACAGATGCATTGGTATCTGAGATTGAAAGAACAGCACCCAATTTGAAGGCATTGGACCAATATGAGGCTCTGGTGGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGAGGGAAAAAACACAGAGATTCAGTGAGATTAAGCAGAGAAGGTACCAGTTGTTCATGGATGCTTTTAACCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAAAGCAATACACATCCACTGGGGGGAACAGCATACCTAAACTTGGAAAATGATGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGTTTCCGTGATATGGAGCAGCTGTCGGGTGGGGAAAAGACAGTTGCAGCACTTGCATTGCTATTCTCCATCCACAGTTATAAACCTTCACCATTTTTTATATTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGGGCAAGGACTAGTCAGGATGCTGATGGTGGAAGTGGCTTTCAGAGTATTGTGATATCATTGAAAGACACTTTTTATGACAAAGCAGAAGCTTTAGTTGGGGTGTACAGAGATTCCGAAAGAGGCTGCTCGAGAACTCTCACATTTGATCTGACTAAATACCGGGAGTCCTAA 3966 0.4213 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIRFTRTITSSGSSEYRIDDTLVNWDTYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTAMVEQISGSDECKRDYEQFEEEKGAAEEKSALAYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKREHFLWQLFNIHNDYVKTIKDLEDEEKSREGVVKELENFEHEASKKKKEQAKYLKEIALREKRIAEKSIKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKRVERAKHDTDIALLQKGIQDLTAKMTELQEKGRDVDDELDLQGNDLDEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELKSQEEQMRGRLEKILNNSANNRTGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELRADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTLKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLIFDFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVNVVLCNLNRLVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEVEVESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKHSLVQCYRKTAMVVLWWKLEAESGGGKTGLHGGRFGCCNHSRANCIERLFYNSHELALLPYRRDELPPLMLSPLIKVEWVVQKVVLGIKVVQGLKRSIEDKLSNLSQEKKTIKERIECISPELKKVLNDAVNKSNAEIRKLEKRINEITDRIYRNFSESVGVANIREYEENRLKAAQNIAEERLNLSSQLSKLKYQLEYEQNRDMSSRILELEASLSALEKDLKRVQDREAAAKLTAEKATEEVNQLKEEVKEWKSKSEDCEKEIQEWKKKASASTTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQINLPIIPDPMDTDSSVPGPFFDFDQLSRALKDKRHSDRDRIELEFKQKTDALVSEIERTAPNLKALDQYEALVEKERAVTEEFEAVRKEEREKTQRFSEIKQRRYQLFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDADGGSGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00635 1321 Gene3D - 498 577 - -
Spst7g00635 1321 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 735 - -
Spst7g00635 1321 Coils Coil 342 369 - -
Spst7g00635 1321 Coils Coil 170 190 - -
Spst7g00635 1321 Gene3D - 1002 1320 IPR027417 -
Spst7g00635 1321 CDD ABC_SMC1_euk 10 169 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Spst7g00635 1321 CDD ABC_SMC1_euk 1200 1315 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Spst7g00635 1321 Coils Coil 251 285 - -
Spst7g00635 1321 Gene3D - 578 668 - -
Spst7g00635 1321 Coils Coil 454 502 - -
Spst7g00635 1321 Coils Coil 198 231 - -
Spst7g00635 1321 Coils Coil 683 703 - -
Spst7g00635 1321 Pfam RecF/RecN/SMC N terminal domain 10 1302 IPR003395 -
Spst7g00635 1321 Pfam SMC proteins Flexible Hinge Domain 517 629 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Spst7g00635 1321 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Spst7g00635 1321 SUPERFAMILY Smc hinge domain 481 690 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Spst7g00635 1321 Coils Coil 307 327 - -
Spst7g00635 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1302 IPR027417 -
Spst7g00635 1321 Coils Coil 1010 1044 - -
Spst7g00635 1321 PIRSF SMC 812 1318 IPR024704 GO:0005524|GO:0016887
Spst7g00635 1321 PIRSF SMC 8 742 IPR024704 GO:0005524|GO:0016887
Spst7g00635 1321 Coils Coil 855 882 - -
Spst7g00635 1321 SMART SMC_hinge_2 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Spst7g00635 1321 Gene3D - 8 232 IPR027417 -
Spst7g00635 1321 Coils Coil 896 916 - -
Spst7g00635 1321 Coils Coil 398 439 - -
Spst7g00635 1321 Coils Coil 826 846 - -
Spst7g00635 1321 Coils Coil 933 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00635 Spst-Chr7 6275397 6291360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00635 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 1.45e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00635 K06636 - gmx:100791953 1835.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00635 7 6275397 6291360 Spst7g00635 7 6275397 6291360 ECH