Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00627 ATGGATTTTGATTCATGTTTGTTCCAGTACCGAACCCTTAACTCTCCCTTTGTAAATTCTTCTTTTTGTGCAGAATCATTCCCTTGGGAGGACTTTTTTCTCTTCAATGAAGAAAACAGCAGCAGCACCACTTCCACCACCCTTGATAATCCCTTTACCTTCACTGACCACTCACAGATCAAGGAATCATCCTCAGATTCCAACTCTTCAGGCTCTTTGATCAGCACTGAGTCACAGCTGGAAGTGTCTTCCAATGTAACTCATGCAAGTCAAGGCCAAGTGGTGAAAGAAGGACATGCATCACCACTTCCAAAGGAGAGCATCAAAGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAGATAAGAGACTCCACAAGAAATGGGGTTAGGGTGTGGATTGGCACATTTGACACAGCAGAGGCTGCAGCACTGGCCTATGACCAAGCAGCTTTGTCCACAAGAGGTTCCATGGCAGTGCTGAACTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGGCCAACAAGCCCTGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAGGAAACACACCATGAGAAGAAAGTCCAAAGCCATAACCAAAAAGCCCAAAAGGGAGCATCACGGAATGGAGTTAGAGAATGTGGTTTCACAAAATGTGTTGGTCTTGGAGGATTTGGGCTCTGAGTACTTGGAACAACTTCTCAGCTTAACTTCTTCTTCTGCTTCATCTTCTTCCTCTGATCATGTGCTTTCCTAG 792 0.4621 MDFDSCLFQYRTLNSPFVNSSFCAESFPWEDFFLFNEENSSSTTSTTLDNPFTFTDHSQIKESSSDSNSSGSLISTESQLEVSSNVTHASQGQVVKEGHASPLPKESIKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMANKPWEDGSSPVLALKRKHTMRRKSKAITKKPKREHHGMELENVVSQNVLVLEDLGSEYLEQLLSLTSSSASSSSSDHVLS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00627 263 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Spst7g00627 263 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 MobiDBLite consensus disorder prediction 42 112 - -
Spst7g00627 263 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Spst7g00627 263 MobiDBLite consensus disorder prediction 203 222 - -
Spst7g00627 263 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Spst7g00627 263 PANTHER DNA-BINDING DOMAIN 69 254 IPR044808 GO:0003700|GO:0009873
Spst7g00627 263 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Spst7g00627 263 MobiDBLite consensus disorder prediction 42 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00627 Spst-Chr7 6191633 6192424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00627 85 254 AP2-EREBP Transcription Factor Family AT3G23240 52.299 1.77e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst7g00627 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00627 K14516 - gmx:100784784 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00627 7 6191633 6192424 Spst7g00627 7 6191633 6192424 ECH
Spst1g03099 1 39604896 39605585 Spst7g00627 7 6191633 6192424 PCT