Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00625 ATGACTTCCCCTTTCATCCAGAACCGAGATTGGGACCTGTCGCAGGAGCCCTCAGAAATTTTGTTCAATTCATTGCCGAGCAATGCTGTTCTTGACCCTATTCACGATTATCTTTCCTTCGATATGGTTGATTTCTCCACGCCATCACCACAAGGAAACCACAACCAGTTGGTGCTGAAGTCTGAACAAGTGCCTGAAGATGTGCAGAATAAGGAGAGGTCGTACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATATGCAGCAGAAATCAGAGACACAACCAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCGTTAGCTTATGACCAAGCTGCATTCTCCATGCGAGGCCATAATGCTGTAACCAATTTTCCGGTCCAAAGGGTCAAAGAATCTTTGCAAGAAATCCAATATAGCTGCTTCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCATCAAAAGCTAAAAAGTGTAAAGGGAAAGACACATCAGATGATCCAACACAAAGTGTGGTGGTGTTAGAGGATTTGGGAGTTGACTATTTAGAGTATCTTCTAAGCATATCCGATCAAACTGCAAGCCCTAGCTGCTTCCACTAA 648 0.4506 MTSPFIQNRDWDLSQEPSEILFNSLPSNAVLDPIHDYLSFDMVDFSTPSPQGNHNQLVLKSEQVPEDVQNKERSYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVTNFPVQRVKESLQEIQYSCFNGSSPALALKERHCIQRKLSSKAKKCKGKDTSDDPTQSVVVLEDLGVDYLEYLLSISDQTASPSCFH 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00625 215 PANTHER DNA-BINDING DOMAIN 61 203 IPR044808 GO:0003700|GO:0009873
Spst7g00625 215 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Spst7g00625 215 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Spst7g00625 215 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 CDD AP2 75 134 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Spst7g00625 215 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00625 Spst-Chr7 6164807 6165454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00625 69 210 AP2-EREBP Transcription Factor Family AT3G23240 56.338 2.72e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst7g00625 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00625 K14516 - gmx:100812017 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00625 7 6164807 6165454 Spst10g00418 10 4398794 4399417 ECH
Spst7g00625 7 6164807 6165454 Spst7g00625 7 6164807 6165454 ECH
Spst1g03101 1 39639537 39640154 Spst7g00625 7 6164807 6165454 PCT