Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00624 ATGGCTTCCCCTTTCTTGCAGAACTCACCAGATTGGGATATGTTGCAGGACCCTTCAAACTTTTTGTTCGAACCATTTTCAAGCAATAATTCTGTTCTTGAACCTATTCACGATTCTCTTTGCTTCGATATGGTTGATTTCTCCACGGCACCAACACAGGGAAGCCACAACCAATTGGTGGTGAAGTCTGAAGAAGTGCAGAATAAGGAGAAGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCCGAGACACGACCAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCAGCGTTAGCTTATGACCAAGCCGCATTTTCCATGAGAGGCCAAAACGCTCAACTCAATTTTCCAGTAAAAGCGGTGAAAGAGTCTCTGCAAGAGATCCAATATAGCTGCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAGAGGCACTGCATCAAGAGAAAATTGTCATCAAAGGGTAGAAAGGGTAAAAGGAAAGAGACATCAAAGGCAGCAACACCAAGTGTTGTGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAGCAACTTCTAAGCATATCTGATCAGAGTGCAAGCCCTAGCTACTTCAACTAA 642 0.4533 MASPFLQNSPDWDMLQDPSNFLFEPFSSNNSVLEPIHDSLCFDMVDFSTAPTQGSHNQLVVKSEEVQNKEKSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGQNAQLNFPVKAVKESLQEIQYSCSNGSSPALALKERHCIKRKLSSKGRKGKRKETSKAATPSVVVLEDLGVDYLEQLLSISDQSASPSYFN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00624 213 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Spst7g00624 213 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 FunFam Ethylene-responsive transcription factor 2 71 132 - -
Spst7g00624 213 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Spst7g00624 213 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Spst7g00624 213 PANTHER DNA-BINDING DOMAIN 57 204 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00624 Spst-Chr7 6152437 6153078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00624 25 208 AP2-EREBP Transcription Factor Family AT3G23240 49.462 1.59e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst7g00624 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00624 K14516 - gmx:100811486 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00624 7 6152437 6153078 Spst7g00624 7 6152437 6153078 ECH
Spst7g00624 7 6152437 6153078 Spst1g03102 1 39646732 39647409 PCT