Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00601 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTATGGTGGCCCCAACAACAACAACCCATCTTAATGGAACCAACCCCAAACCCCTCCTCCACTTCCTGGCCCTCTGCGGACCCTCTCCGTCTCAATCTCAACCACCAAAACGACGACTTAGAAGAAGACGAGGAAGAGGAAGAAGAAGACCAAACGACAACCACTGGACAGGAGCAAGAAACCGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTTGGGAAACTCAACCGCCTCGTAATCCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTCAGCGGTGGCGGTTACTCGGCCGAGTGCAAGGGGCTTCTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGGTTCCGCTACTCTTACTGGAACAGCAGCCAGAGCTACGTTCTCACCAAGGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGATGCAGGCGACGTCGTTTTGTTCGAGCGCCACCGCGCCGATTCCCACCGCCTCTTCATCGGATGGAGGCGCCGGCGACAAAGCGACACCCCGCCGGCGCACGTTAGCGGGAGGGCGGTGGGGCACGGGAAGAGTGGCGATGGAAATAGTAAGAATGAGGGTGCTGCTACCAGTGGTGGTGGTGGTGGTGGTGTGGTGTGGACCAGAGGGCTCTATTCTGCGCATCCTTATCCTACGCATCATCCTCATCAGCCCTTGCCATACCAACATGCAGGACAAGAAGATTTAAATAATTACATTCTTGTGGAAGTGCGTGAAGTTTACCTTCCAATTAAGTGGGAGAAATGTGGTGTGTTATATGGGGAATTGCGAGGAGGCGAATACTTTGTTTAA 882 0.5476 MSINHYSMDLPETTLWWPQQQQPILMEPTPNPSSTSWPSADPLRLNLNHQNDDLEEDEEEEEEDQTTTTGQEQETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGYSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADSHRLFIGWRRRRQSDTPPAHVSGRAVGHGKSGDGNSKNEGAATSGGGGGGVVWTRGLYSAHPYPTHHPHQPLPYQHAGQEDLNNYILVEVREVYLPIKWEKCGVLYGELRGGEYFV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00601 293 Gene3D - 70 198 IPR015300 -
Spst7g00601 293 MobiDBLite consensus disorder prediction 19 88 - -
Spst7g00601 293 MobiDBLite consensus disorder prediction 19 46 - -
Spst7g00601 293 SUPERFAMILY DNA-binding pseudobarrel domain 78 192 IPR015300 -
Spst7g00601 293 Coils Coil 44 64 - -
Spst7g00601 293 MobiDBLite consensus disorder prediction 191 224 - -
Spst7g00601 293 FunFam B3 domain-containing protein 76 198 - -
Spst7g00601 293 ProSiteProfiles B3 DNA-binding domain profile. 83 189 IPR003340 GO:0003677
Spst7g00601 293 SMART B3_2 83 189 IPR003340 GO:0003677
Spst7g00601 293 CDD B3_DNA 81 179 IPR003340 GO:0003677
Spst7g00601 293 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 197 IPR044800 GO:0003700
Spst7g00601 293 MobiDBLite consensus disorder prediction 52 71 - -
Spst7g00601 293 Pfam B3 DNA binding domain 83 188 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00601 Spst-Chr7 5549023 5550586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00601 78 188 RAV Transcription Factor Family AT3G11580 77.311 1.90e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst7g00601 B3 2.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00601 K09287 - gmx:100795470 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00601 7 5549023 5550586 Spst7g00601 7 5549023 5550586 ECH
Spst1g02701 1 35503150 35504365 Spst7g00601 7 5549023 5550586 PCT