Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst7g00599 | ATGGCGACTCAAATGAGCAAGAAGAGAAAGTTTGTGGCCGATGGAGTGTTCTTCGCAGAACTGAACGAGGTTCTGACGCGAGAGCTGGCGGAGGATGGTTACTCCGGCGTGGAAGTTAGAGTTACGCCGATGCGCACCGAAATCATAATCAGAGCTACTAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATCAGGGAACTTACCTCGGTGGTTCAGAAGAGGTTCAAGTTTCCAGAAAACAGCGTTGAACTGTACGCCGAGAAAGTCAACAACAGGGGACTTTGCGCTATAGCTCAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGACTTGCTGTACGCAGGGCTTGCTATGGTGTTTTGAGGTTTGTTATGGAGAGTGGTGCCAAGGGATGTGAGGTGATTGTGAGTGGGAAATTGAGAGCACAGAGGGCAAAATCCATGAAGTTTAAGGATGGCTACATGATTTCCTCTGGTCAACCTGTCAAAGATTATATCGACTCTGCAGTGAGACACGTGCTCCTCAGACAGGGTGTTCTTGGCATTAAGGTAAAGATTATGCTTGATTGGGATCCTAAAGGGAAGCAGGGTCCTAAAACTCCCCTTCCTGATCTAGTTACAATCCATGCTCCAAAGGAGGAAGAGGAATATATCCGACCTGATCCCGTTTTGGCCAATGATATCATAGAAGCAAGTGCCTAG | 708 | 0.4859 | MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHAPKEEEEYIRPDPVLANDIIEASA | 235 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst7g00599 | 235 | Pfam | Ribosomal protein S3, C-terminal domain | 106 | 188 | IPR001351 | GO:0003735|GO:0006412 | |
Spst7g00599 | 235 | CDD | KH-II_40S_S3 | 5 | 95 | - | - | |
Spst7g00599 | 235 | Gene3D | - | 1 | 91 | IPR015946 | - | |
Spst7g00599 | 235 | Gene3D | - | 93 | 219 | IPR036419 | - | |
Spst7g00599 | 235 | SUPERFAMILY | Ribosomal protein S3 C-terminal domain | 93 | 191 | IPR036419 | - | |
Spst7g00599 | 235 | PANTHER | 30S/40S RIBOSOMAL PROTEIN S3 | 6 | 198 | - | - | |
Spst7g00599 | 235 | FunFam | 40S ribosomal protein S3 | 93 | 228 | - | - | |
Spst7g00599 | 235 | FunFam | 40S ribosomal protein S3 | 1 | 92 | - | - | |
Spst7g00599 | 235 | NCBIfam | 30S ribosomal protein S3 | 8 | 210 | IPR005703 | GO:0003735|GO:0006412|GO:0015935 | |
Spst7g00599 | 235 | ProSiteProfiles | Type-2 KH domain profile. | 21 | 92 | IPR004044 | GO:0003723 | |
Spst7g00599 | 235 | ProSitePatterns | Ribosomal protein S3 signature. | 147 | 183 | IPR018280 | - | |
Spst7g00599 | 235 | Pfam | KH domain | 20 | 93 | IPR004044 | GO:0003723 | |
Spst7g00599 | 235 | SUPERFAMILY | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | IPR009019 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst7g00599 | Spst-Chr7 | 5523877 | 5525610 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst7g00599 | 1 | 228 | Cytoplasmic Ribosomal Protein Gene Family | AT5G35530 | 88.596 | 4.67e-151 | 418 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst7g00599 | K02985 | - | gmx:100800747 | 443.351 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst7g00599 | 7 | 5523877 | 5525610 | Spst7g00599 | 7 | 5523877 | 5525610 | ECH |