Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00594 ATGCAACACTCTGAGTTGCATAATCACAACATGGCTGCCACTGCTGCTACAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAACAGTGTCAAATGTCTTCGTTTCAAGAACTGCTCCATGATGGATCCCCTCATGACAGCAGTGCCCTCAAACCGCATGTTTGCATCTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTACCATTTCGCATAGGTTGTGGGGGCCTAGAATATCTGCTGCTGTTGCACAAGAAGAGGTGGTGGTGGTGGATGATTTTAGTTTGGGTGAAGAAGAGAAAGTCGAGGAGAGTGAAGAGGGAGTGGTGGCAGAACAAGACTTTGATGAATCCTCTACTAACACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGACAGTGCCAAACTTGCAGGGCTGATTCAGGATTATGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCCTTGAAGATTGTGAAGCAGTGATAGAAAATCTTGATGGAAAAGAATTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAACAAACCAAAACCAAAAGAGCCTTTGTACCCTGAAACTGAACATAAGCTCTTTGTTGGGAACCTGTCATGGTCAGTAAATAATGAGATTTTGACACAAGCTTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCAACAAAAGCAGAGATGGAATCTGCCCTTGAAGCCTTGAATGATGTGGAACTAGAAGGACGAGCTATGCGTGTAAGTTTGGCTCAAGGAAAACGTGCACAAGGCTAA 891 0.4411 MQHSELHNHNMAATAATGIASLFSSSINSVKCLRFKNCSMMDPLMTAVPSNRMFASVSHLVEPLSIGGTISHRLWGPRISAAVAQEEVVVVDDFSLGEEEKVEESEEGVVAEQDFDESSTNTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCLEDCEAVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVNNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVELEGRAMRVSLAQGKRAQG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00594 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Spst7g00594 296 PANTHER OS02G0815200 PROTEIN 50 294 - -
Spst7g00594 296 SUPERFAMILY RNA-binding domain, RBD 206 293 IPR035979 GO:0003676
Spst7g00594 296 SUPERFAMILY RNA-binding domain, RBD 118 204 IPR035979 GO:0003676
Spst7g00594 296 Gene3D - 85 202 IPR012677 -
Spst7g00594 296 Gene3D - 203 296 IPR012677 -
Spst7g00594 296 SMART rrm1_1 214 287 IPR000504 GO:0003723
Spst7g00594 296 SMART rrm1_1 123 196 IPR000504 GO:0003723
Spst7g00594 296 FunFam 28 kDa ribonucleoprotein, chloroplastic 204 295 - -
Spst7g00594 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 284 IPR000504 GO:0003723
Spst7g00594 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Spst7g00594 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Spst7g00594 296 CDD RRM2_NsCP33_like 214 289 - -
Spst7g00594 296 FunFam 31 kDa ribonucleoprotein, chloroplastic 84 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00594 Spst-Chr7 5477310 5479647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00594 116 292 Eukaryotic Initiation Factors Gene Family AT3G16380 33.163 2.15e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00594 - - gmx:100820203 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02652 1 34926990 34931196 Spst7g00594 7 5477310 5479647 PCT