LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst7g00539	ATGTTGATCATGCTGTTGTTGCTCTTCAACTTGCTGATCCAGCCTCAACCTGGTGCAAGTACTGTGGTTGACCCCAACACTTTCTCCTTTGTTACTTTCACTCCTGAAAGTTGCACCAATGGTGAGCTGCTTTGCATGGGTTCAGCCACTGCTGGAAATGGGTATTTGAGTCTCACCAAAGAGCCACAACAAAGCAGCAACTCAAGTTCAACACTGTCTAACAGAACCAGCAATGTTGGAAGGGTTCTGTACCCTCATCCTGTGCATGTCTGGCCTGCAATTATCTCTACCACATTCACTATTAGGATCACTCCTTTTTCAGAAAATTCAACCGGCTCTGGGGATGGAATGGCACTAGTGTTTGCTCAAGATAACAGGCCCTCACCAAATGGCTCATATCTTGGCCTGTTTGATCAATCTACACCAGGTGGGGGTTTTCAACAACTAGCTGTGGAGATGGACACTTTCATGAATGAATTTGATCAAGATGGAAACCACATTGGGATAGTCACAACAAGCATCACAAATCCACTTGCATCTGAGAGTCTCAATAGCACTGGAATTGACCTCAAAAGTGGAAGAGACATTGAGGTCAAAGTTGACTATGACGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACCCTGAAGGCCAATTGAAGAATGTCCTTAACCATTCAATTAACCTACCTGACATTGTGCCAAGCTCCATATATGTTGGTTTCACATCCTCCACGGGCAACACTTTTCCTGAGAGCCACCAGGTCCTCAATTGGGTATTCACATCAGTGCCACTGCCTTTTCTTTCTGTTGAACAATCTAGAGTTGGCACCACCATCAAGACCATATTGGTAATTGTCATGGTATGCTTATTTCCTTTTATTTGGATAGCTGTTTGGAGGAAAAGATATATGAGGGGTAAAAGGAAGGGGGATATAGAAAGCCTATCAAAGACTGCAGATATCCCTAAGGTGTTCACTTACAAGCAACTATCAAGGGCCACATGCAACTTCAACCCGGAAAATCTTTTGGGAAAGGGTGCATTTGGAAGTGTTTATAAAGGAATCATATTAGACTCTGGAAAAACTGTAGCAATAAAGAAGATTTCAGCAACTTCTAAGCAAGGTGAAAGAGAGTTCTTAGCTGAAATATGCACCATAGGGCGTCTTAGGCACAAAAACTTGGTGAAGCTCCAAGGTTGGTGCAGCGAAGGGAAGAATCTTCTCTTGGTTTATGATTACATGCAAAACGGAAGCCTTGATCACTTCATAGGCAAAGGAAGTCTGAACTGGCAAACCAGGCACAAAGTATTGACAGGATTGGCATCAGCATTACTTTACCTTCATGAAGAGTGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCTAACAATGTCATGTTGGACTCTAATCACGATGCTCATTTGGGTGATTTTGGGCTAGCAAGATTACTAAAAACTGAAGGTTCAGTGACCACAAATCTAAATGGAACTCTAGGATATTTAGCTCCTGAACTAAGCTTTACAGGGAGAGCTACACCTGAATCAGATGTGTATAGCTTTGGCATGGTAGTTCTTGAAGTCATATGTGGGAAAAGGTTAAACTGGATTAAGCAAGGGAACAGTTTTGTAGACTCTGTATGGAATTTGCATGCTCAAAATGCATTGATCGAGTGTGTTGACCAACGACTAGAGAAAAAAATTGACGAGGAAGAAGCTACAAGGGCATTAATAGTTGGATTGGCATGTTTGCATCCCGATTCCATGTTCAGGCCAAGGATGAGAAAAGTGGTGAACATTTTTCAGAACCCAAATGAACCATTAATGGAGTTACCAGCAGTGAGGCCAACAGGAGTTTATGTGTCAGTTTCTTGTAGTGCATCCTCCTCCAACTCTGGCTCTAGTGGTGATTCACAGCTCCAATCATCCTCAACATCATCGGATAGAAAATTCAATAGTCTATGA	1965	0.4239	MLIMLLLLFNLLIQPQPGASTVVDPNTFSFVTFTPESCTNGELLCMGSATAGNGYLSLTKEPQQSSNSSSTLSNRTSNVGRVLYPHPVHVWPAIISTTFTIRITPFSENSTGSGDGMALVFAQDNRPSPNGSYLGLFDQSTPGGGFQQLAVEMDTFMNEFDQDGNHIGIVTTSITNPLASESLNSTGIDLKSGRDIEVKVDYDGWSKMIFVSVGYPEGQLKNVLNHSINLPDIVPSSIYVGFTSSTGNTFPESHQVLNWVFTSVPLPFLSVEQSRVGTTIKTILVIVMVCLFPFIWIAVWRKRYMRGKRKGDIESLSKTADIPKVFTYKQLSRATCNFNPENLLGKGAFGSVYKGIILDSGKTVAIKKISATSKQGEREFLAEICTIGRLRHKNLVKLQGWCSEGKNLLLVYDYMQNGSLDHFIGKGSLNWQTRHKVLTGLASALLYLHEECGNPFVHRDVKPNNVMLDSNHDAHLGDFGLARLLKTEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVICGKRLNWIKQGNSFVDSVWNLHAQNALIECVDQRLEKKIDEEEATRALIVGLACLHPDSMFRPRMRKVVNIFQNPNEPLMELPAVRPTGVYVSVSCSASSSNSGSSGDSQLQSSSTSSDRKFNSL	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst7g00539	654	ProSitePatterns	Protein kinases ATP-binding region signature.	344	368	IPR017441	GO:0005524
	Spst7g00539	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Spst7g00539	654	Gene3D	-	24	271	-	-
	Spst7g00539	654	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	264	IPR013320	-
	Spst7g00539	654	ProSiteProfiles	Protein kinase domain profile.	338	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst7g00539	654	FunFam	probable L-type lectin-domain containing receptor kinase S.5	323	414	-	-
	Spst7g00539	654	PANTHER	-	65	605	-	-
	Spst7g00539	654	CDD	lectin_legume_LecRK_Arcelin_ConA	28	263	IPR001220	GO:0030246
	Spst7g00539	654	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	24	274	-	-
	Spst7g00539	654	SMART	serkin_6	338	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst7g00539	654	Pfam	Legume lectin domain	27	264	IPR001220	GO:0030246
	Spst7g00539	654	MobiDBLite	consensus disorder prediction	629	654	-	-
	Spst7g00539	654	MobiDBLite	consensus disorder prediction	56	76	-	-
	Spst7g00539	654	SUPERFAMILY	Protein kinase-like (PK-like)	321	634	IPR011009	-
	Spst7g00539	654	Gene3D	Phosphorylase Kinase; domain 1	323	414	-	-
	Spst7g00539	654	Gene3D	Transferase(Phosphotransferase) domain 1	415	609	-	-
	Spst7g00539	654	FunFam	probable L-type lectin-domain containing receptor kinase S.5	415	609	-	-
	Spst7g00539	654	Pfam	Protein kinase domain	341	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst7g00539	Spst-Chr7	4961328	4964077	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst7g00539	31	628	Receptor kinase-like Gene Family	AT5G55830	36.834	6.17e-115	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Spst7g00539		Pkinase	1.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst7g00539	-		-	gmx:102665030	1101.27