Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00538 ATGGCTGTGGCCAGTGGTGACTTGCTGACAGAGAAAGCTTCGGCGATGAGAGCGTCTCTGGAGAGAAGCCAGACCATCACGGACGACGTCGTTTCGATTCTGGGCTCCTTCGATCACCGCCTCTCCGCCCTGGAAGCCGCCATGCGCCCTACCCAGATCAGAACAAATTCTATTCGGAAAGCTCACGAGAATATTGATAGGACTTTGAAGACTGCCGAGGCCATATTGGCTCACTTTGATCAATATTACCAGGCAGAGGCAAAAATAATCAAAGGACCACATGAAGATGTGAAGAGCTATCTTGAAGCAATTGATCAACTGAGACGAAACATTAGATTTTTTGGCAATAAAAAGGGTTTTAAGAATGATGATGGTATTGCCATCCGTGCCAATAATTTGATAACAGAAGCTATTTCTAAGCTAGAAGAAGAGTTTGAGCGGCTATTATCATCTTACAGTAAACCTGTGGAACCTGAACGCCTCTTTGGCTCTCTTCCAAACACAATGCGACCTTCATCAGCATCACCAGGTCGAGATGATGATTCCGGTAGCAAGAATCATTCTTCTTATATCCATTCTGAGCCACATAAAAATAATGCTGATGCTGTTGTATACACACCTCCTGTTCTTATACCACCAAGAATATTGCCGTTGCTCAATAATTTAACTGAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAATATACAGATATAGACATGGGCGGCTAGATACATTACATGTTTCGATCTACATTCTTTTAGGCAATGTCCAGGTTGGGAAGCTTCATATTCCTTTCAAGTATGATCTGTGCATCTTTGTGAGCTTTGTTTCTTTCTATGTGTGGTTTACTAAAGGGGGGAAGCTGGTTTTGTACCATTTTGCTGCAATTCAGAGAAGGCCTGTGGATGTTATAAAAGATACCCGTTCTAAAGTATTGGAAGAAAGTCTACAAAAGCTTGGAGTTGAGAAACTCAGCAAAGATGATGTTCAAAAGTTACAATGGGAGGTTTTGGAAGCCAAAATTGGAAATTGGATTCATTTCATGCGTATTGCTGTCAAATTGTTGTTTGCTGCTGAACGGAAAGTCTGTGATCAGATATTTGAAGGATTTGACTCGCTTAGTGATCAGTGTTTTGCTGAAGTTACTACAAACAGTATTTCCATGCTACTTAGTTTTGGAGAAGCTATTGCCAAAAGCAAGAGATCCCCTGAAAAGTTATTTGTACTTTTGGACATTTTGGGCTGTTCGAGGCTGCCACAGAAAACACCAGAGTTCACTGGAGGAGCCAAGCAAATGCCTTGGGCTGGTGCAGGCTACTTTTCGGAGTTTCAGGGGCCATCTAGACTTGATGATGGTCTGGTTCTCAGTTCAATTGCCAAAGCAGCTAACCTAAGTTGGACCCATTGTGGCCGGCCACCAACCTTGGCTACTATTGACCACCTTGGGACATCACATTCTCCACCTGGAACGTGCCACCAATCACGACCCAGATCTATGATGCCCACACCCTACAAAAGGATGACTACTGTGACCCCTACATTTGCAAAGCCCACCTCCTGCAATGCTCACAACTGA 1587 0.436 MAVASGDLLTEKASAMRASLERSQTITDDVVSILGSFDHRLSALEAAMRPTQIRTNSIRKAHENIDRTLKTAEAILAHFDQYYQAEAKIIKGPHEDVKSYLEAIDQLRRNIRFFGNKKGFKNDDGIAIRANNLITEAISKLEEEFERLLSSYSKPVEPERLFGSLPNTMRPSSASPGRDDDSGSKNHSSYIHSEPHKNNADAVVYTPPVLIPPRILPLLNNLTEQMVQAGHQQQLLKIYRYRHGRLDTLHVSIYILLGNVQVGKLHIPFKYDLCIFVSFVSFYVWFTKGGKLVLYHFAAIQRRPVDVIKDTRSKVLEESLQKLGVEKLSKDDVQKLQWEVLEAKIGNWIHFMRIAVKLLFAAERKVCDQIFEGFDSLSDQCFAEVTTNSISMLLSFGEAIAKSKRSPEKLFVLLDILGCSRLPQKTPEFTGGAKQMPWAGAGYFSEFQGPSRLDDGLVLSSIAKAANLSWTHCGRPPTLATIDHLGTSHSPPGTCHQSRPRSMMPTPYKRMTTVTPTFAKPTSCNAHN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00538 528 Pfam Exo70 exocyst complex subunit 347 419 IPR046364 GO:0000145|GO:0005546|GO:0006887
Spst7g00538 528 Gene3D Exocyst complex component Exo70 73 261 - -
Spst7g00538 528 MobiDBLite consensus disorder prediction 488 508 - -
Spst7g00538 528 MobiDBLite consensus disorder prediction 180 194 - -
Spst7g00538 528 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 419 IPR004140 GO:0000145|GO:0006887
Spst7g00538 528 SUPERFAMILY Cullin repeat-like 75 254 IPR016159 -
Spst7g00538 528 SUPERFAMILY Cullin repeat-like 305 447 IPR016159 -
Spst7g00538 528 Gene3D Exocyst complex component Exo70 297 428 - -
Spst7g00538 528 MobiDBLite consensus disorder prediction 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00538 Spst-Chr7 4948425 4958293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00538 309 434 EXO70 exocyst subunit family AT5G52340 71.429 1.68e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00538 K07195 - var:108324478 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00538 7 4948425 4958293 Spst7g00538 7 4948425 4958293 ECH
Spst1g02977 1 38315587 38317497 Spst7g00538 7 4948425 4958293 PCT