Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00535 ATGCCAATAGCAAACGTTTTAAGGATCATGCGAAGGATTTTGCCACCGCATGCAAAGATCTCAGATGAAGCAAAAGAAACCATCCAAGAATGTGTGTCTGAATACATCAGTTTCATAACTGCAGAAGCAAATGATCGCTGCCAGCACGAGCAGCGCAAGACTGTGACAGCTGAAGATGTGTTGTGGGCGATGGCAAAGCTTGGCTTCGATGAATATGCTCACTCTCTTACCATCTACCTTAATCGCTACCGTCAAAGTGAAGGACAACAACGCATTTCCATGAGACGTGGTTCTACTTCTATGCCTCAAATGGAGATGCCTCCACCTTACTCTCATCCTCATGGTTTTGAAATGTTCAACTTTGATCCCTCACATGCCTCAGCTTCTGCTTCTCATGCTTCTGGATCAGATGGATATGTTCCCACCTTTGATCCTTATGCTAGCTTAAATACTAACTTAAACCTCACTGATGATGGTGCTATGTGA 486 0.4403 MPIANVLRIMRRILPPHAKISDEAKETIQECVSEYISFITAEANDRCQHEQRKTVTAEDVLWAMAKLGFDEYAHSLTIYLNRYRQSEGQQRISMRRGSTSMPQMEMPPPYSHPHGFEMFNFDPSHASASASHASGSDGYVPTFDPYASLNTNLNLTDDGAM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00535 161 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Spst7g00535 161 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Spst7g00535 161 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Spst7g00535 161 SUPERFAMILY Histone-fold 1 110 IPR009072 GO:0046982
Spst7g00535 161 Gene3D Histone, subunit A 1 107 IPR009072 GO:0046982
Spst7g00535 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst7g00535 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Spst7g00535 161 FunFam Nuclear transcription factor Y subunit B-6 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00535 Spst-Chr7 4924207 4924692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00535 1 101 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.248 5.11e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst7g00535 CBFD_NFYB_HMF 1e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00535 K08065 - gmx:100811633 203.371