Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00530 ATGGCTCCTACACTTGTACGTGCATTCTCTCATTTCTTCACTCTTGCAGCTTCACTTTCAATGCTCCATGTTGTTCCTTCCTCTTGTTTCAACCCTAGAAAGATTGTTAATGCTTCATTGGCTTCATATGGTTCAGATTGGTCATCTGCTGTGGCAACTTGGTATGGACCTGCTCAAGGGGATGGTAGTGAAGGTGGTGCTTGTGGTTATGGAAGCTCTGTTGGTGAACCTCCATTCTCATCACTGATATCTGCTGGAAGCCCTCTTTTGTATGAATCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGAAATTACGCATGCTCAGGGAACCCTGTGAGGGTAGTAATCACTGATGAATGTCCAGGTTGTGGCTCAGATTCCCAATACCATTTTGATTTGAGTGGCTCTGCTTTTGGTGCCATGGCAGTTTCAGGCCAAGACCAGAAGCTACGCAATGCTGGGAAAATAAACATTCAATATAGAAGGTGGAGACGAGTTTCCTTTTGCAGAGTTGAATGCAACTATGGTGGTGTGTCGATAGCTTTTCGCGTCGACACTGGATCCAACCAAGAATACTTTGCAATGGTGATTGAATTTGAGGGTGGTGATGGTGATCTTGAGAAAGTTGAACTGAAGGAAGCTCTTGATTCAGCGCCATGGTACACCATGCAGCGATCATGGGGTGCAGTTTGGAAACTTGACAAAGGGTCTCCACTCAATCCACCATTCTCCATCAGACTAACCACTGTTAAATCTGTGAACACTGTCGTGGCTAGCAATGTCATCCCTAAGGACTGGACCCTTGGTCAAACATACAGATCAATTCGGTTCATGTACCTCTTTTGCTCCTATAAATACTCATGGCAACCTAGGGAAGTAACAACTCCCAGTGATTCTATTGTTAATGCTTCAATTGATTCACACTCCTCAGATAGTGTATACTGGTCATCTGCTTTTGCCACGTGGTATGGACCTGATCATGGGGATGGAAGTGAAGCTGGTGCTTGTGGTTATGGCAGCACTGTTGGGGTACCTCCATTGTCATCAATGATAACTGCAGGAAGCTATCTTTTGTTTCAATCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGAATAAAGCATGCTCCGGCAAACCAGTGAGGGTAGTGATGACTGATTTGTGTCCTGAATGTGGCTCAGGGGCACATTTTGATATGAGTGGCACTTCTTTTAGTGCAATGGCAGCTCCAGGTCAAGATAATCAGCTACGCATAGCAGGCCAAGTAGCCATTCAATATAGAAGGTATATGTCAGTAGCTTTTCACGTGGATTCTGGATCGAACCAATTATATTTTGCAGTGATGGTTGAATACGAGGATGGGGATGGTGAGATTGACAAGGTTGAAGTGAAGGAAGCATGTTCAAAGCACCATTCTAGATCTCCATCTTGGGGTGCAGTGTGGAAACTTAGCAAAGGGTCACGATTCAAAGCACGTGTTCAAATTTCCGCTAACCAACTTTAA 1527 0.4486 MAPTLVRAFSHFFTLAASLSMLHVVPSSCFNPRKIVNASLASYGSDWSSAVATWYGPAQGDGSEGGACGYGSSVGEPPFSSLISAGSPLLYESGKGCGSCYEVKCTGNYACSGNPVRVVITDECPGCGSDSQYHFDLSGSAFGAMAVSGQDQKLRNAGKINIQYRRWRRVSFCRVECNYGGVSIAFRVDTGSNQEYFAMVIEFEGGDGDLEKVELKEALDSAPWYTMQRSWGAVWKLDKGSPLNPPFSIRLTTVKSVNTVVASNVIPKDWTLGQTYRSIRFMYLFCSYKYSWQPREVTTPSDSIVNASIDSHSSDSVYWSSAFATWYGPDHGDGSEAGACGYGSTVGVPPLSSMITAGSYLLFQSGKGCGSCYEVKCTGNKACSGKPVRVVMTDLCPECGSGAHFDMSGTSFSAMAAPGQDNQLRIAGQVAIQYRRYMSVAFHVDSGSNQLYFAVMVEYEDGDGEIDKVEVKEACSKHHSRSPSWGAVWKLSKGSRFKARVQISANQL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00530 508 Gene3D - 302 435 IPR036908 -
Spst7g00530 508 Gene3D - 33 168 IPR036908 -
Spst7g00530 508 Pfam Expansin C-terminal domain 440 503 IPR007117 -
Spst7g00530 508 Pfam Expansin C-terminal domain 184 267 IPR007117 -
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Spst7g00530 508 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Spst7g00530 508 SUPERFAMILY Barwin-like endoglucanases 318 436 IPR036908 -
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 377 387 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 442 457 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 458 473 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 394 409 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 357 368 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 PRINTS Major pollen allergen Lol pI signature 487 504 IPR005795 GO:0005576|GO:0019953
Spst7g00530 508 SMART dpbb_1 355 434 IPR007112 -
Spst7g00530 508 SMART dpbb_1 83 164 IPR007112 -
Spst7g00530 508 SUPERFAMILY PHL pollen allergen 439 500 IPR036749 -
Spst7g00530 508 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 451 508 IPR007117 -
Spst7g00530 508 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 337 436 IPR007112 -
Spst7g00530 508 Gene3D - 436 507 IPR036749 -
Spst7g00530 508 Gene3D - 176 279 IPR036749 -
Spst7g00530 508 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 166 IPR007112 -
Spst7g00530 508 Pfam Lytic transglycolase 84 164 IPR009009 -
Spst7g00530 508 Pfam Lytic transglycolase 356 426 IPR009009 -
Spst7g00530 508 SUPERFAMILY PHL pollen allergen 184 278 IPR036749 -
Spst7g00530 508 CDD DPBB_EXPB_N 47 166 - -
Spst7g00530 508 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 278 IPR007117 -
Spst7g00530 508 CDD DPBB_EXPB_N 319 436 - -
Spst7g00530 508 SUPERFAMILY Barwin-like endoglucanases 38 166 IPR036908 -
Spst7g00530 508 PANTHER EXPANSIN-B3 23 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00530 Spst-Chr7 4779010 4784099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00530 308 508 Expansin Gene Family AT1G65680 49.048 3.41e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00530 - - gmx:100777550 452.595