Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00517 ATGAGTGCGACCCCTGGTGCAGCAGTAAAGTTGCGCCTTGGTGTTCAGTTGGATATGGCAGAAGATATGAAAATTGATCAAATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTGAAGGGTGGCGATCAGAAATATTTAGGTAATCCTGAGAAGAGGAGCAGAGCTTTCAATGCTGCAGTTGAAATGAATAACAGTAACTGTACAACATTGTCACCGTCAGAGAAATCTTATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGGTCAAACAACACATTCTATTGGAGCTGAAAAGGCGGAGAAAGGGAAAAGTGTAAGCTCCAAAGTTTCTTCTAAATCATCTCACTGTGGTATTTCTGTTTTAGATTTGACTGAAGAGAACGGACAGTGCCAACAACTTAAACCAACTTTCTCACATCGTGGATTAAGAGATCATGCAAACGAAGACAAGAAAGTGCTGAAAGCAACTATTGGGAACTCTTTATTGCCAGCCATTTCAGATTCTTCCAATACATCTAGAAATTCCTTCACTGGAAAGTGCAAACTTGATAATAAAACACTTACAGGCCCTAGTATATCTGTGGACCGCGGCAAAGGTATTTCTTTATCTCATGATTCTCGATCTCAAATTGAAAAGCAAGTGGCTTTGACTCCATTTGTTTCCACCCCTCCACGAGGTAGAGGGCACAAGAGATTGGTGCGAAATGGGTGCATTTCACCTCATAATATCGCAAGGGCAAAACAATTAGCTGAACAGAGCAACCCTCAAACAGAAGATGTTGAACAGAGGCATGCTGATCATGTGGTTTCTATCAATAATACAGTGTCACCAAATAGTGTTGATGACATAGTTGCTAGTAGGAGAGGCAATGGTAGAGTCAAAGGAAAGGAAGTACTTGTTCCTCCTTCATTCCATGGACGCAATGCGGGAACTTTTCATGTTGCTAGCAGCAGCCCTGTGATCAATTATGAAGAGGTCACTGGTAGCAGTAATGATACAAGAAATTCGCATCAATACTCTGGGGGACAAGGTGGATGGAGAACTACTCATAATGAGAGGAATGCTAATCGGCACTTGTATGATGTACATGGGCATCATTTGACGAGAAATAGTGGTGTTGGAAGAATTATTCATAGACGGAATACATGCAGAATGGACAAAATAAACATTGGGAATGATCAAAGCAGCACACATGTACACGGTTCTCAATCAGATAAGACAGCTCAACCAAGTTCTGGGATCATTCTAGACGTGGACCAGTCATCAGGTATTCGTCCTACTGCTGACATTCTGACTAAAAGGCAAAGGAAACGTGAATCACCTGGGGAATCAAGTTCATTTCCGGAATTGGTAGAGTTGTTAACCACACCAAGGAATTCAGCAAGCACATCCCAGAGCCGTGTGGATCCTGAAGTGATTGAGTTGTTATCCACACCAAGATACAGATCAAGTGAAGATTTAGATGATAATGATAGTAATAGCTTGGAAGCTCGGGCTAGACAAGTGGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAATTGTATCATGATGATTCTATCGAAGACACAGGGATTGATGAACATTTAGCGTGGGAGTTGCAGCATGCAGAGGATCTTCTGGATACACCTATTGATAATCACAACATAAATTATTCTACACGGATTCCTAGGGCAAATAGACAGTCTCGTATATGGCCTAATCAAAATTCTTCTAGAAGGAGAGCTATGCCTCAAGGTTCTTTCCCTAATAGAATGTCACGGTTGAGGAGTCGTGTTCCAAGTAGGACTCGGACACCTAACATGTCATATAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTGGACACGAGACTTGATATATTGGAAGCTTTAGAGGATTCAATGGGGGGTTTCAGAGATATGGGAATGGCTGATGACATCTTTAATGAGCTACGTGATTTCAACGAAAGTGATTATGAAAGGTTATTGGCCCTTGATGAGAGAAATCACCAACATACTGGTGCATCTACCAATCTGATCAATAGCCTTCCGCAGTCAACCATCCAGAATGACAACGTGACAGAGCCATGTGCTATATGTCTTGAGACCCCAGCCAGGGGGGAAACTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCGGAGGAGAACAACATGCCCCGTGTGCAAGTCGTCAATCACCTAA 2226 0.4259 MSATPGAAVKLRLGVQLDMAEDMKIDQIVEVPDTPDRITVKGGDQKYLGNPEKRSRAFNAAVEMNNSNCTTLSPSEKSYPSQNAPIFRRGQTTHSIGAEKAEKGKSVSSKVSSKSSHCGISVLDLTEENGQCQQLKPTFSHRGLRDHANEDKKVLKATIGNSLLPAISDSSNTSRNSFTGKCKLDNKTLTGPSISVDRGKGISLSHDSRSQIEKQVALTPFVSTPPRGRGHKRLVRNGCISPHNIARAKQLAEQSNPQTEDVEQRHADHVVSINNTVSPNSVDDIVASRRGNGRVKGKEVLVPPSFHGRNAGTFHVASSSPVINYEEVTGSSNDTRNSHQYSGGQGGWRTTHNERNANRHLYDVHGHHLTRNSGVGRIIHRRNTCRMDKINIGNDQSSTHVHGSQSDKTAQPSSGIILDVDQSSGIRPTADILTKRQRKRESPGESSSFPELVELLTTPRNSASTSQSRVDPEVIELLSTPRYRSSEDLDDNDSNSLEARARQVEADEILARELQEQLYHDDSIEDTGIDEHLAWELQHAEDLLDTPIDNHNINYSTRIPRANRQSRIWPNQNSSRRRAMPQGSFPNRMSRLRSRVPSRTRTPNMSYRGRGPRFPLDMDLDTRLDILEALEDSMGGFRDMGMADDIFNELRDFNESDYERLLALDERNHQHTGASTNLINSLPQSTIQNDNVTEPCAICLETPARGETIRHLPCLHKFHKDCIDPWLRRRTTCPVCKSSIT 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00517 741 SUPERFAMILY RING/U-box 683 740 - -
Spst7g00517 741 Pfam Ring finger domain 696 737 IPR001841 -
Spst7g00517 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 741 IPR013083 -
Spst7g00517 741 PANTHER SI:CH211-59O9.10 177 741 - -
Spst7g00517 741 MobiDBLite consensus disorder prediction 572 613 - -
Spst7g00517 741 MobiDBLite consensus disorder prediction 390 420 - -
Spst7g00517 741 CDD RING-H2_PA-TM-RING 695 737 - -
Spst7g00517 741 SMART ring_2 696 736 IPR001841 -
Spst7g00517 741 ProSiteProfiles Zinc finger RING-type profile. 696 737 IPR001841 -
Spst7g00517 741 MobiDBLite consensus disorder prediction 329 352 - -
Spst7g00517 741 MobiDBLite consensus disorder prediction 572 605 - -
Spst7g00517 741 MobiDBLite consensus disorder prediction 390 495 - -
Spst7g00517 741 FunFam RING/U-box superfamily protein 661 741 - -
Spst7g00517 741 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00517 Spst-Chr7 4603915 4609555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00517 502 741 C3H Transcription Factor Family AT1G04790 48.606 1.91e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00517 - - gmx:100796218 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00517 7 4603915 4609555 Spst7g00517 7 4603915 4609555 ECH