Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00514 ATGGCGGTGGTGGTTTCTTCTTCTGCGCGGTGGGTCCTCTTGCTGCTTCTGGCGCTGCTGCTGCTGCTGCTCGTTCAACAACAAGCCATGGCCACCACCACACCACAGATCTCTCACCTCAGGAATGTTGAAGTGGAAAACCGAAGGTTGCCGAGCTTGCAGAACTCGTCAATGGCGGAGAGGGCAATAGAGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAATAGTACACAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGATCCCGACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCAGAAATGCCATTGGTGGTCGTGATGGCAAGTTCTATGTTGTGACTGACCCCAGGGACGATGACCCTGTGAACCCTAAACCTGGCACTCTTCGCCATGCTGTGATCCAGGACAGGCCCCTGTGGATTGTGTTCCAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGTCAATGTACACATTGCTAATGGGGCATGCATCACAATCCAGTTTGTCACCAATGTCATCATCCATGGCCTGCATATTCATGATTGCAAACCCACTGGAAATGCCATGGTCAGGAGCTCCCCCACCCACTTTGGCTGGAGGACAATGGCTGATGGCGATGCCATCTCCATATTTAGCTCAAGCCACATTTGGGTTGATCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACTATTTCAAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCTCATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTTCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGCAACCGATACAATGCTCCTGTTAATCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGCCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTACTGAATGGTGCCTTTTTCACCCCATCAGGCGCTGGAGCCTCAGCCAGTTATGCCAGGGCCTCAAGCTTAGGAGCCAAATCTTCTTCCATGGTTGGTTCCATGACCTCAAATGCTGGTGCACTCGGTTGCAAAAGAGGCCATCAGTGCTAG 1365 0.5004 MAVVVSSSARWVLLLLLALLLLLLVQQQAMATTTPQISHLRNVEVENRRLPSLQNSSMAERAIEAEKLNEQAAVANPEEVVSMVEMSIQNSTQRRNLGFFSCGTGNPIDDCWRCDPDWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFQRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFSSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGHQC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00514 454 PANTHER PECTATE LYASE 18-RELATED 67 452 IPR045032 GO:0030570
Spst7g00514 454 SMART amb_all 180 377 IPR002022 -
Spst7g00514 454 Gene3D - 105 447 IPR012334 -
Spst7g00514 454 FunFam Pectate lyase 105 447 - -
Spst7g00514 454 Pfam Pectate lyase 187 369 IPR002022 -
Spst7g00514 454 SUPERFAMILY Pectin lyase-like 80 448 IPR011050 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 152 177 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 252 273 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 188 204 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 354 373 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Spst7g00514 454 PRINTS Pollen allergen Amb family signature 128 145 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00514 Spst-Chr7 4551642 4556324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00514 36 454 Polysaccharide Lyase AT4G13710 79.481 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00514 K01728 - gmx:100808253 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00514 7 4551642 4556324 Spst7g00514 7 4551642 4556324 ECH