Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00479 ATGTTGAGGATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGATTGAGTCGATGTTTGGGGTGTGAGAGGGTGGAATTGGTTGTGTCAGCAGATAATGATGGTGGTGAATGTGGTGGTGGTTGCAAGAGTGGCTTTAATGGGGCTGGGGCTGAGTTTGAGTTTGAAGCGGGTGCAAGTAAAGAGAGCAAGGTCAATAGTACCAGAGATGATGATCCTGGAGAGATGAATACGAACCAAGTTAGCAATTACAGCTATGGGGAAGCTGAGGCGTTGACTGATGAGATTGAAGAAGAATCACAATATGTTGAAGAGGTGTTCAGGATCAAGGATGTTTTGCTCAACTGTGAAGAAGAACAGTCTGATTCAGTTTTGTTTGATTCATTGAGAAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATACTCTTCGAAAACATGGATCAAATGACATTTGTCAACTTGCGCGGACTCTTATCGATGGCTGGAAGGAAATGGTGGATGAGTGGGTCACGGCTACCACAGTTATTGCAGGTTCTGAAGGTACTCCAGATTCAGTTAATCCATCTGTTGTTGATGACGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCGATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGTGTAGGGAATTCATCAAGAACCATGAACATGGAAGAAGATCATCTCTGAACCGTCAAAATACAGCAAAGAGGAAATCTCAGACATCAAATGAGGTAAACATTATTGCCAAGGACAGTAAGGGTCAGCAAGCAAAGAAAGATGAGGCTGCTGTGAGGTCAAATAAACCAGTTATCGCTGATTCTGGCCCTGGCAGACCACCGAAATCAAGCATGCAGAAAAAAGGCTATATTGAGCTGCAGATGCAACAAAATACAGTGAAGAGTGCTATCCCAAAAAATCCTCATCTTCATCAGCTAGATAAACTCAGGTGTTTGGATGATGCTTCTGCCCAGGTGAAGTTAGAAGCCACTAAAAGGAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGACAGCGGACAGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGTATTGGGCACCGAAATCCACATGTGAAAACCGGAAGCCACAAGAAGCAATGGGGTGATGGACGAAGATAG 1371 0.4486 MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELVVSADNDGGECGGGCKSGFNGAGAEFEFEAGASKESKVNSTRDDDPGEMNTNQVSNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEEQSDSVLFDSLRRLQLMELTVDLLKATEIGKAVNTLRKHGSNDICQLARTLIDGWKEMVDEWVTATTVIAGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRQCREFIKNHEHGRRSSLNRQNTAKRKSQTSNEVNIIAKDSKGQQAKKDEAAVRSNKPVIADSGPGRPPKSSMQKKGYIELQMQQNTVKSAIPKNPHLHQLDKLRCLDDASAQVKLEATKRKLQERYQQAENAKRQRTVQVMELHDLPKQGIGHRNPHVKTGSHKKQWGDGRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00479 456 MobiDBLite consensus disorder prediction 432 456 - -
Spst7g00479 456 MobiDBLite consensus disorder prediction 100 123 - -
Spst7g00479 456 MobiDBLite consensus disorder prediction 305 322 - -
Spst7g00479 456 CDD TFIIS_I 146 220 - -
Spst7g00479 456 MobiDBLite consensus disorder prediction 280 301 - -
Spst7g00479 456 MobiDBLite consensus disorder prediction 275 357 - -
Spst7g00479 456 Pfam TFIIS helical bundle-like domain 171 219 IPR017923 -
Spst7g00479 456 Coils Coil 396 423 - -
Spst7g00479 456 ProSiteProfiles TFIIS N-terminal domain profile. 146 222 IPR017923 -
Spst7g00479 456 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 229 IPR035441 -
Spst7g00479 456 MobiDBLite consensus disorder prediction 231 252 - -
Spst7g00479 456 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 443 IPR044805 -
Spst7g00479 456 SMART TFS2_5 148 221 IPR003617 GO:0005634
Spst7g00479 456 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 227 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00479 Spst-Chr7 3965041 3975644 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst7g00479 Med26 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00479 - - gmx:100775579 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00479 7 3965041 3975644 Spst7g00479 7 3965041 3975644 ECH
Spst1g03514 1 44261247 44263881 Spst7g00479 7 3965041 3975644 PCT