Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00449 ATGCAACCCTTTGAACCCAATTTCACCTTTTGCACCCCCAACACCTCAGTTTCACAACCCATAATACAAGGTTCAATTTCACCATCTGATATTTCTGTCACTGATTACTTGCTACCCCCACATGTTCAGCTTCAACATCACATGAACCATATCCGCCTTCAGATGCCTCAGCTCACATCTTTCTCCAAGCCTCCAAGGTCCTCAAATCTAAGCAACCGCAAACCCTCCTTGAAAAACATCACCATCCCTTCCTTAACCTCAGGTCTTGTGCTGCCACGACACATGGAAACAACAACAACGACAGTAGCTACAACCATGAATAACAACAACAATAACCCAGTTTCTTCTTCTTCTTCTTCTTCTTCTTTAGATGATGCCAACAATACCAACGAAGATAAGCACTATAGAGGGGTTAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGGGACCCCAGTAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAGTCTGAAGAATCAGTTTCAAGTTGCACCAAGGTTGGTGTGAAGAGAGAAAGAGAGGAAGAGAGTGAAGGGAACAAGTATGAGGCAAGTGAGTTTAGCAGTAACAATAGTATCAAGCAGATGAAGAAAGACGATTCCTCTCCCAAAGGAGTGTGCCCTTTGACTCCCTCATGTTGGAAAGGCTTTTGGGACACCGATGTTATGGGAACCATCTTTAGTGTGCCTCCTCTGTCACCACTGTCTCCATTGATGGTTGTTTAA 849 0.4511 MQPFEPNFTFCTPNTSVSQPIIQGSISPSDISVTDYLLPPHVQLQHHMNHIRLQMPQLTSFSKPPRSSNLSNRKPSLKNITIPSLTSGLVLPRHMETTTTTVATTMNNNNNNPVSSSSSSSSLDDANNTNEDKHYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESVSSCTKVGVKREREEESEGNKYEASEFSSNNSIKQMKKDDSSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00449 282 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
Spst7g00449 282 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 MobiDBLite consensus disorder prediction 59 79 - -
Spst7g00449 282 MobiDBLite consensus disorder prediction 103 138 - -
Spst7g00449 282 PRINTS Ethylene responsive element binding protein signature 174 194 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
Spst7g00449 282 PANTHER DNA-BINDING DOMAIN 103 237 IPR044808 GO:0003700|GO:0009873
Spst7g00449 282 MobiDBLite consensus disorder prediction 212 243 - -
Spst7g00449 282 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Spst7g00449 282 MobiDBLite consensus disorder prediction 103 126 - -
Spst7g00449 282 FunFam Ethylene-responsive transcription factor 2 133 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00449 Spst-Chr7 3590376 3591224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00449 49 275 AP2-EREBP Transcription Factor Family AT5G51190 42.489 1.44e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst7g00449 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00449 K09286 - gmx:100795866 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00449 7 3590376 3591224 Spst7g00449 7 3590376 3591224 ECH
Spst1g03103 1 39651037 39651426 Spst7g00449 7 3590376 3591224 PCT