Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00448 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACATCTCTTAGGTGAAAACATCTCAGACTCCTTGTTCTCCAACCTCCATCCTGTGAAACTTGAAGCCCCCTCATCACCAGAGTTTGATTTCAGCTCATTTATTTCAGACAACACCAGTTTCTTCACTTTCCTTCAAGGGTATGATTTGGTGGCAGACATGGAGTTTGTTGATCACAAGGCCGTGAAGTCCACAGCAACAACAACCATCACCATCCCCTCTAAGGAACCAAAGAAATGCAATTCTCCTGAACCAATGGTATCATCAGAAGAGAAGGGAAAGAAGGCAGAAAATGATGAGGCAAAGCGTTACAGGGGAGTTAGGAGAAGGCCTTGGGGCAAATTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGGACAAGGGTTTGGCTTGGCACTTTTGACAGTGAAATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTCTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCAAAGCCAAACAGTTGTGGCAGGAAAAGGAGAAGAGAGAGCCATGAATTGGAGCTGTCACAAGTCCAAGTTCATCATGGTGTGTCCTGA 636 0.4591 MTTAEETSNLDLIRQHLLGENISDSLFSNLHPVKLEAPSSPEFDFSSFISDNTSFFTFLQGYDLVADMEFVDHKAVKSTATTTITIPSKEPKKCNSPEPMVSSEEKGKKAENDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESHELELSQVQVHHGVS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00448 211 MobiDBLite consensus disorder prediction 176 211 - -
Spst7g00448 211 CDD AP2 116 175 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 MobiDBLite consensus disorder prediction 88 116 - -
Spst7g00448 211 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 MobiDBLite consensus disorder prediction 184 202 - -
Spst7g00448 211 MobiDBLite consensus disorder prediction 102 116 - -
Spst7g00448 211 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 PRINTS Ethylene responsive element binding protein signature 157 177 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 FunFam Ethylene-responsive transcription factor 2 116 177 - -
Spst7g00448 211 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Spst7g00448 211 PANTHER DNA-BINDING DOMAIN 88 187 IPR044808 GO:0003700|GO:0009873
Spst7g00448 211 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Spst7g00448 211 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00448 Spst-Chr7 3585754 3586389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00448 1 205 AP2-EREBP Transcription Factor Family AT5G07580 39.545 8.29e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst7g00448 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00448 - - ccaj:109813158 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00448 7 3585754 3586389 Spst7g00448 7 3585754 3586389 ECH
Spst1g03158 1 40083675 40088048 Spst7g00448 7 3585754 3586389 PCT