LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst7g00438	ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAACAAAGTGAGAGAGAAACCACAGAATTCCCGAGCGAAGTTCCATCTTCCACAAACCCCAACAAACCCTCGAAATTCCCATTCTACAGCCCAAGCCCATTGCCGAGTTGGTTCAAAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACGCCCGTGAGGATCTTCAAACGCCCCTTCCCTCCTCCCTCGCCAGCCAAGCACATTCGCGCGCTCCTCGCTCGCCGCCACGGTTCGGTCAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGGTTGGTTTGGATAAGAGCTTCGGCTTCGCCAAACACTTCTCTGCCCATTACGAGCTCGGCGAAGAAGTGGGCCGCGGCCATTTCGGCTACACCTGCTCCGCCACGGCCAAGAAAGGTCCCTTCAAGGGCATCGACGTTGCCGTAAAAGTCATTCCCAAAACCAAGATGACGACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTGAAAATATTACGGGCTCTAACAGGACATAAAAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGCTATGCAAAGGAGGGGAATTGCTAGATAGAATTCTTTCCAGGGGTGGAAAGTACCCAGAAGAGGATGCCAGAGTAGTTATGATCCAAATATTAAGTGTGGTAGCTTTTTGTCATCTGCAGGGTGTTGTTCACCGCGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTTGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTACGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGTCGTCCCTTTTGGGCCAGGACAGAATCTGGTATATTTCGGGCTGTACTTAAGGCAGATCCAAGTTTTGACGAGGCTCCTTGGCCTTCTTTATCTGCTGATGCAAAAGATTTTGTGAAGAGGTTGTTGAATAAGGATTATCGTAAAAGATTGACTGCAGCTCAGGCACTAAGCCATCCATGGCTGGTGAATCATGATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAACTTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTTTTAGGGCCAAACAAAAGTGGATTAATCTCTATGCAGAACTTCAAGACGGCTGTCTTGAGGAGCTCCACAGATGCCTCAAAGGATTCACGGGTCTTAGATTATGTGAATATGGTTAGTTCCATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCCGCTATAAGTGTGCACCAATTAGAGGGAGTGGAGAGCTGGGAGCAGCATGCTAGGCGTGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGGGCAATTATGATTGAAGAACTTGCCTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGATTTCTTCCCGCTCGTTTCAGAAGGCTTGA	1737	0.4554	MGICHGKPIETQQSERETTEFPSEVPSSTNPNKPSKFPFYSPSPLPSWFKNSPANSNPSSVSSTPVRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFAKHFSAHYELGEEVGRGHFGYTCSATAKKGPFKGIDVAVKVIPKTKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDRILSRGGKYPEEDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHDDDMRIPLDMIIHKLVKTYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGVESWEQHARRAYELFEKEGNRAIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGISSRSFQKA	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst7g00438	578	FunFam	CDPK-related kinase 1	398	570	-	-
	Spst7g00438	578	Gene3D	Transferase(Phosphotransferase) domain 1	214	406	-	-
	Spst7g00438	578	MobiDBLite	consensus disorder prediction	15	36	-	-
	Spst7g00438	578	MobiDBLite	consensus disorder prediction	1	38	-	-
	Spst7g00438	578	FunFam	CDPK-related kinase 1	117	212	-	-
	Spst7g00438	578	Pfam	Protein kinase domain	124	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst7g00438	578	SUPERFAMILY	EF-hand	415	569	IPR011992	-
	Spst7g00438	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	248	260	IPR008271	GO:0004672\|GO:0006468
	Spst7g00438	578	SUPERFAMILY	Protein kinase-like (PK-like)	114	420	IPR011009	-
	Spst7g00438	578	Gene3D	-	407	569	-	-
	Spst7g00438	578	FunFam	Calcium-dependent protein kinase SK5	296	391	-	-
	Spst7g00438	578	Gene3D	Phosphorylase Kinase; domain 1	117	213	-	-
	Spst7g00438	578	SMART	serkin_6	124	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst7g00438	578	PANTHER	SERINE/THREONINE-PROTEIN KINASE	110	554	-	-
	Spst7g00438	578	CDD	STKc_CAMK	123	385	-	-
	Spst7g00438	578	FunFam	CDPK-related kinase 3	116	288	-	-
	Spst7g00438	578	ProSitePatterns	Protein kinases ATP-binding region signature.	130	156	IPR017441	GO:0005524
	Spst7g00438	578	ProSiteProfiles	Protein kinase domain profile.	124	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst7g00438	Spst-Chr7	3495949	3502906	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst7g00438	1	576	EF-hand Containing Proteins	AT3G50530	66.719	0.0	845

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Spst7g00438		Pkinase	1.9e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst7g00438	K13412		-	gmx:100796678	1050.43