Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00437 ATGCAGCATCAGATGGAGATTGAGAACTCTGAGCTCTTCCAAATCCTCTCAAACACCAACCATTCTTTCTTTCCTGAACCTGCATCATCAACCATGCAACAAAGCTTCTCTGGTTCCTTTTCTTGTTACCCTTTTGAAGCATTTGATGCACCACCTCATGAAGACAAAGCTCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTCAACAAGCTTCGCACTCTTCTTCCTTGTAATTCCAAGACAGACAAGGCTTCACTCTTGGCGAAGGTGGTCCAAAGGGTGAAGGAGTTGAAGCAGCAGATATCTGAAACAACCGAATCCGAAACGTTTCCTTCGGAGACCGACGAGATCTCTGTTCTCTCCACCACCGGTGACGACGGTGGTGGTGACGGTGACGGACGACTCACATTGAAGGCGTCGTTGTGCTGTGAAGACCGCTCCGACCTCATCCCTGACCTCGTGGAAATCCTCAAGTCTCTGCACCTCCGAACGCTCAAAGCCGAAATGGCCACGCTCGGAGGAAGAACCCGCAACGTTCTGGTGGTGACCACCGACAAAGAGCATGGCGTTGAATCAATCAAGTTCCTGCACAACTCGTTGAAGTCTCTGCTGGAACAATCCAATTCCAACGCCATTTCGAAACGACGCCGTGTGTTAGGCCCTAACTCCATCGCTTAA 711 0.4993 MQHQMEIENSELFQILSNTNHSFFPEPASSTMQQSFSGSFSCYPFEAFDAPPHEDKALAALRNHKEAEKRRRERINSHLNKLRTLLPCNSKTDKASLLAKVVQRVKELKQQISETTESETFPSETDEISVLSTTGDDGGGDGDGRLTLKASLCCEDRSDLIPDLVEILKSLHLRTLKAEMATLGGRTRNVLVVTTDKEHGVESIKFLHNSLKSLLEQSNSNAISKRRRVLGPNSIA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00437 236 FunFam transcription factor bHLH30 54 117 - -
Spst7g00437 236 PANTHER TRANSCRIPTION FACTOR BHLH30 32 232 IPR045847 GO:0003700|GO:0006355
Spst7g00437 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 108 IPR011598 GO:0046983
Spst7g00437 236 Pfam Helix-loop-helix DNA-binding domain 63 108 IPR011598 GO:0046983
Spst7g00437 236 CDD ACT_UUR-ACR-like 151 218 - -
Spst7g00437 236 Coils Coil 98 118 - -
Spst7g00437 236 Gene3D - 54 120 IPR036638 GO:0046983
Spst7g00437 236 CDD bHLH_AtAIG1_like 54 130 - -
Spst7g00437 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 118 IPR036638 GO:0046983
Spst7g00437 236 SMART finulus 65 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00437 Spst-Chr7 3483219 3484837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00437 54 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 71.006 6.41e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g00437 HLH 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00437 - K22484 pvu:PHAVU_007G243000g 333.569