Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00424 ATGTCAAATAATAGGAACACACATTGGTGTTATAGTTGCAGGAGGCCAGTTCGACTGGGGCGACGGGATGTAGTTTGTCCTAGCTGCAATGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCCTTTGACTTGTTTGGAATGGACAACAATGAAGAACGAGATCAGAGGCTTGGACTCATGGAAACCTTCTCTGCCTTCATGAGGCATCAAATGGCAGATAGGGGTCGAAGCCGGGACATCAGGACGCGAACAGATTCAAATCCTGAACAAAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTCAGATTGTCAGGACACGGTGGCTTTGAATCTCTGTTTAACGGGGCTCCTGGGATAGGTCTGACACGAGGTAACACAGGTGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCACCACCAGCATCAAGTTCCTCAATCGATGCCATGCCTACCATCAAGATCACACAGAGGCATCTTCGATCAGATTCACATTGTCCTGTGTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCTAGAAAAATGCCATGCAACCATTTATATCACTCAGATTGTATAGTTCCATGGTTGGTCCAACATAACTCCTGCCCTGTTTGCCGCCAAGAACTGCCACCACAAGGATTGAGTAGTAACCGTGGCACAAATGGTAGAAGTAGGAGTGGAAGGGTAAGTAGTAGTAGTGGTAGGGAGAGCCAAGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCCAGCAGCAATGATGAAGGAACTGGAAGCAGCACACCAGCACCAACTATCCCAGAGAATAACCATCATGGAGGGTATTCTGGGTGGCCATTTGAATGA 924 0.4578 MSNNRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRLGLMETFSAFMRHQMADRGRSRDIRTRTDSNPEQSAGFAPLLIFGGQIPFRLSGHGGFESLFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASSSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARKMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGTNGRSRSGRVSSSSGRESQGRRNPFSFLWPFRSSHSSSNDEGTGSSTPAPTIPENNHHGGYSGWPFE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00424 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Spst7g00424 307 MobiDBLite consensus disorder prediction 269 293 - -
Spst7g00424 307 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Spst7g00424 307 Pfam Ring finger domain 185 227 IPR001841 -
Spst7g00424 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 231 - -
Spst7g00424 307 SUPERFAMILY RING/U-box 166 233 - -
Spst7g00424 307 SMART ring_2 186 226 IPR001841 -
Spst7g00424 307 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Spst7g00424 307 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Spst7g00424 307 MobiDBLite consensus disorder prediction 232 261 - -
Spst7g00424 307 CDD RING-H2_RNF126-like 186 227 - -
Spst7g00424 307 MobiDBLite consensus disorder prediction 232 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00424 Spst-Chr7 3330096 3331019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00424 115 231 C3H Transcription Factor Family AT5G01980 42.975 1.66e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00424 K11982 - gmx:100787523 572.778