Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00415 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAAAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAAGTTTCTCCTGATCCAGTTGCAATCGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAGCAGATTAAAGTTAAAGAACAACATCAACTGCAAATGCAGCAGTTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCTCTTGGAGGTCCTGTAAATACTATCACCACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAACGGATGAAGCACTCTAACCCCATGGATACAGAAACATCCCAACCCCTTTTAGATGCTAGAATGGCCCTTTTAAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACCGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGTATATGCTTCTACTGTTCAGTCTTCATTTGAATTCTCTTCCTTCCAGGATATCAAAGGTGAAGTCAACATGGGTTCCATGCAGAGATCCTTGCCAATGGACCCCTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATTCAGGTGAGTTTATGATTGAGTCTATGGAAGCTTCACCAATTTACCTAGACTTATATGCTTTTCACGATCTTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGCACAAATCAGTTTCAGCTTTTACCGCAACAACAACAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAACATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAAAGATTAAGGGGATTAACTAGGGGAAGTTTGAATGCTAAAGAGGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGACCGAGGTAGATGAGTCAATTAAGGTAGAATCCGTGTTGACTAGAGATGATTTTCTTAGTGTTGGAAAGCCTACCCCTAGCTCACCAGAGATGATTTTCTTAGTTATGTCTGAGAAGGCATTCAGAGTTTCTGTCTTCCTGATCAACATGCCACAGATCCAACAATCTACCTCCCAGCAACAGCAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCCACTCATACTCCCGGTGATGGAGTTGCTATGGCGGTTAACTTGCAGAATGTTGCTGGCGTATCTAAAGGTTTGATGATGTATGGTACTGATGGAACTGGTGGTCTTGCATCTTCCACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACTGATGCTTCAAAAGGCTTTTCCTTTAGCGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGGATACAGAAAGTACTCCGGAGGAACACAGTCTGATCATTACTGATGTTCGCTTCAGACCAAATTCAACTGAGCTGGCAACTTCTTCATTTGATTCAACTGTTCGGCTGTGGGATGCTTCAAATCCAACCTTTTGTTTACAGGCATTTAGTGGTCATACTTCACAAGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATATTTTCTGTTCATGTGATAATAACAGTGAGATTCGATTCTGGAATATTAGCCAATATTCTTGTACCCGCGTTTTTAAGCAGGGAGGATCTACCCAGGTGAGGTTTCAGCCTAGGGTTGGCCACCTTCTGGCTGCAGCAAGTGGAAGTATTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACATTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAACTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCAATTACATCTGGGGAGTGCATACATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTTTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTTCAGCTCATGAGTGTGTGATATCTGCGCTAGCTCAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGGGTAGATTGTTTCATCTTCTCTCATGTGAAAGAAACTATAACTAGCCAAAATGTAATCTCAGACATGGAGAAGAAGGGTAAAGAAGGTCCTCCGATCTCCCTCTTGGATTTGCCTGAATCCATCTTGGATTTCATTCTCAAGTGCCTTTCTCCAGTAGACCTTAGCACACTGTCAAAGGTGTGTGTGTCCTTGAAGGGTAAATGTGAAAGTGATCACTTCTGGGAAAATCACATAAAACACAAATGGGGAAGAGTGATTGGTGATGCTGTTTATAAGGAGTGGTTGTGGCACATAACAATTGCCAGAGATGGAATTCTCTTGAAGAATCAACACACCAATCAAACTGGGTCAATGGGTTCTTTCACTGGTGTTTGGCCTAATCTATACCTTGGTTCTTACTTGGAACACTGCAAGGTCCTCAATGGTCAACGGTCAAACAACTTCATGATGTCTTTGTATTTCTCTCTTGAGAGTGGTAGGTTTTGGTTTCCTGCTCAGGTCTACAAGGGTCTGATGATTCACAATGCCTTGGTTAACTATGACCCACAATCTAATACTTTTCAAGCAAGGTATCAAAGTGGAGGTTGGAGATGTATAGGGAAGAACATTGAGTGGGATATGGTGAGAGCTCCCTCAGTTGATTCATCTCCATATGGCATGCATGTCTCTCATTGTTTAGAAAACTTGAAACCAGAGGATCATATTGAGATTCAGTGGAGGCCAAGTACACAGTGTCCTTATGATTGGTGGTACGCTGTTATTGGTCACTTGGACTCATGTAATGAGAATCGTTGTGAGTGTCAATACAGTGATACGTTGATGGTGGAGTTCAGGCAATACCCTGAAGAATCAAACATGAGACGAGTAAAGTTGTGCAGAAAGAGAAGTGGAGAAGAAGGTGATAGAATAAGTGGATGTTATGGAGGAATTAGAAAGCTTCACAATGAAGATGAGATTCAAACATGGAAGAAGCTCTTCCCAACTCAAGTTCAGGATTCATATATTTCCTCCCCTTACCTTGGGGACGAATACATGAACAAGGAGGAAAATGGGTGTGTGGATGATGAGCTTCTAGACTCCAACAAGATTAGTGAAAGGGGAAGTGAAGCTTTGAATGTGTGTGCATAA 3666 0.425 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKVKEQHQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNTITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPVYASTVQSSFEFSSFQDIKGEVNMGSMQRSLPMDPSSIYGQGGMQSKPGIANSGEFMIESMEASPIYLDLYAFHDLGIDQIRPGFGAPVQKPLLQSTNQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKEGQSIANDGSIGSPMQSTSSKTEVDESIKVESVLTRDDFLSVGKPTPSSPEMIFLVMSEKAFRVSVFLINMPQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAVNLQNVAGVSKGLMMYGTDGTGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLDTESTPEEHSLIITDVRFRPNSTELATSSFDSTVRLWDASNPTFCLQAFSGHTSQVVSLDFHPKKNDIFCSCDNNSEIRFWNISQYSCTRVFKQGGSTQVRFQPRVGHLLAAASGSIVSLFDVETDRQMHTFQGHSADVHCVCWDTTGDYLASVSQESVKVWSITSGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTISAHECVISALAQSPVTGMVASARVDCFIFSHVKETITSQNVISDMEKKGKEGPPISLLDLPESILDFILKCLSPVDLSTLSKVCVSLKGKCESDHFWENHIKHKWGRVIGDAVYKEWLWHITIARDGILLKNQHTNQTGSMGSFTGVWPNLYLGSYLEHCKVLNGQRSNNFMMSLYFSLESGRFWFPAQVYKGLMIHNALVNYDPQSNTFQARYQSGGWRCIGKNIEWDMVRAPSVDSSPYGMHVSHCLENLKPEDHIEIQWRPSTQCPYDWWYAVIGHLDSCNENRCECQYSDTLMVEFRQYPEESNMRRVKLCRKRSGEEGDRISGCYGGIRKLHNEDEIQTWKKLFPTQVQDSYISSPYLGDEYMNKEENGCVDDELLDSNKISERGSEALNVCA 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00415 1221 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 850 IPR044716 GO:0003714
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 700 IPR001680 GO:0005515
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats profile. 573 614 IPR001680 GO:0005515
Spst7g00415 1221 MobiDBLite consensus disorder prediction 439 479 - -
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 573 608 - -
Spst7g00415 1221 Gene3D - 550 705 IPR015943 GO:0005515
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 615 650 - -
Spst7g00415 1221 MobiDBLite consensus disorder prediction 341 370 - -
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats profile. 741 781 IPR001680 GO:0005515
Spst7g00415 1221 MobiDBLite consensus disorder prediction 439 476 - -
Spst7g00415 1221 Pfam WD domain, G-beta repeat 654 691 IPR001680 GO:0005515
Spst7g00415 1221 Pfam WD domain, G-beta repeat 615 647 IPR001680 GO:0005515
Spst7g00415 1221 Pfam WD domain, G-beta repeat 578 605 IPR001680 GO:0005515
Spst7g00415 1221 Pfam WD domain, G-beta repeat 737 772 IPR001680 GO:0005515
Spst7g00415 1221 ProSiteProfiles F-box domain profile. 877 923 IPR001810 GO:0005515
Spst7g00415 1221 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Spst7g00415 1221 CDD WD40 569 851 - -
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 650 IPR001680 GO:0005515
Spst7g00415 1221 SMART Lish 8 40 IPR006594 GO:0005515
Spst7g00415 1221 Gene3D - 706 862 IPR015943 GO:0005515
Spst7g00415 1221 SMART WD40_4 566 605 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 775 814 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 608 647 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 651 691 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 816 853 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 734 772 IPR001680 GO:0005515
Spst7g00415 1221 SMART WD40_4 694 731 IPR001680 GO:0005515
Spst7g00415 1221 SUPERFAMILY F-box domain 870 931 IPR036047 GO:0005515
Spst7g00415 1221 Pfam LisH 10 36 IPR006594 GO:0005515
Spst7g00415 1221 Gene3D - 867 964 - -
Spst7g00415 1221 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Spst7g00415 1221 ProSitePatterns Trp-Asp (WD) repeats signature. 592 606 IPR019775 -
Spst7g00415 1221 Pfam F-box domain 880 921 IPR001810 GO:0005515
Spst7g00415 1221 SUPERFAMILY WD40 repeat-like 567 851 IPR036322 GO:0005515
Spst7g00415 1221 ProSitePatterns Trp-Asp (WD) repeats signature. 634 648 IPR019775 -
Spst7g00415 1221 MobiDBLite consensus disorder prediction 342 368 - -
Spst7g00415 1221 SMART fbox_2 883 923 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00415 Spst-Chr7 3252983 3271176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00415 567 818 U-box Gene Family AT2G33340 26.667 3.87e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Spst7g00415 F-box 0.00011 CL0271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00415 - - var:108326218 1368.99