Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00413 ATGTCAGACGAGTTTTTTGCTAAAGGTGATGAGAGTAGAAAGCTCAAACGTAAGATCGAGGAAGCATCTTCAACTGATGTTGTGGATTCAGAGCTGTTACTATCTATGAGTCTTGGCCAAAACAAAATGGTTGGAGAATCCTCATCCATGTCCCTCTGCAGAACTTTGAAAAACCACATGGATTCACTTTCTTCTCCAAAACCTATGGAGAACACAAACCATCAACTGGTCATACCTAAGCAACAGCGTCAATTCCCATGCAAGTTCTGTGACAAGAAGTTTCCAAGCTCTCAAGCTTTAGGGGGCCATCAAAATGCTCACAGACGTGAAAGAGTGCTCTCAAGAATGGACAGAGAATTTGACATGGGAACTTTTGGACTTGGTGTTCATATGTATCCATACTCAGCAACCATGACTCATCATCAACATCCTTTTTGTGGTTCTATACCTCTTTACTATGAGGCTAACATGCACCCCACCATGGCTCAGATGTCAACCGTGCCATGGCCACATTTTGCACCAGGTTATGGCAACCAAGGGTTGCACAACGCCTCCATTTCTGGGCAAAGATTTGGGGTGACCAACCCTGGGGGCATAGCCCTTGAAACCCCTCAAAATGTATATCGTAGAGGTTTAGGGTTTAGTTTTGAACATAACCAGGTTCATCCCTTTGATGCCACCAATGCAGCTTCTGTGGCTCGCCCTAGTTTTAGTGGCCTTATGAGAAACCAATATGCTGCAAATCAACCATTTTGA 756 0.4418 MSDEFFAKGDESRKLKRKIEEASSTDVVDSELLLSMSLGQNKMVGESSSMSLCRTLKNHMDSLSSPKPMENTNHQLVIPKQQRQFPCKFCDKKFPSSQALGGHQNAHRRERVLSRMDREFDMGTFGLGVHMYPYSATMTHHQHPFCGSIPLYYEANMHPTMAQMSTVPWPHFAPGYGNQGLHNASISGQRFGVTNPGGIALETPQNVYRRGLGFSFEHNQVHPFDATNAASVARPSFSGLMRNQYAANQPF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00413 251 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Spst7g00413 251 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Spst7g00413 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Spst7g00413 251 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 185 IPR044246 GO:0009788
Spst7g00413 251 Pfam C2H2-type zinc finger 85 110 - -
Spst7g00413 251 Gene3D Classic Zinc Finger 67 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00413 Spst-Chr7 3236573 3237328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00413 83 154 C2H2 Transcription Factor Family AT1G24625 36.082 2.42e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g00413 zf-C2H2_6 1.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00413 - - gmx:102663144 306.99