Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00361 ATGGAAGTGGAGAAGGAAAACATTGCATCGAATATTACTGCAGAACCGTCTTTACCTGCCTCTGATGATCAAGATCCTGTTTCTGTTAATGCATCTCTACCCCATTCAATACAACCTACAATTCCACCGGTTATTGCACCTTCTGTTGTGCCTCCTTTAGCACCGATTCCTGCAATTCCTCCCCCTCGGCCACTGGCACCACTTCCAGTTCGGCCACCAGTCATTAGACCACCTTTGCCACAAAATGGTGAGGTTGGATCAAGTGACTCTGACTCAGACAATGATGACTCAAAAGCAAGAATTAACCAGGGGACTGGGGAGTATGAGATATCTGAAGAGAGTAGACTGGTGAGAGAGCGACAGGAAAAGGCAATGCAAGAACTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGGCATCTTGGTGAGCCAATAACTCTGTTTGGTGAGAGAGAGATGGAGAGACGGGACAGGTTGCGGATGATCATGGCAAAGCTAGATGCTGATGGTCAGCTGGAGAAGCTGATGAAAGCTCACGAGGATGAAGAGGCTGCAGCTTCTGCTCCAAAAGATGAGACTGAGGAAGAATTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTGCTGGATGCAAGAATTTATATCACTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAAAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTGACGCAGGCTGGAAATTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGACCACTTTCAGGTTGCTCCTTTTCAAGGGATGGAAAATGGCTTGCTACCTGTTCCCTGACTGGAGCTTCCAAGTTGTGGAGCATGCCCAGAATAATAAAGCATTCCACCTTGAAGGGGCACACAGAGCGTGCAACAGATGTTGCTTATTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATCAAGGATCACTTTTGAAGACATTCGAAGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACGTAGGCACTGCTAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGGGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCACCGTGATGGATCATTAGCTGCATCTTGTGGATTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTTAAGCCGGTTCTTGGTATCAGTTTTTCACCTAATGGATATCATCTAGCCACCGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTGGTAACTGCCTCATATGACATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTAACCTCTGTGGATGTTCTTGGAGATGGTGGCCACATTGTTACTGTCTCCCATGATCGCACCATAAAACTGTGGTCCAGCAATACGACTAACGAACAAACTATGGATGTTGACTAA 1710 0.4556 MEVEKENIASNITAEPSLPASDDQDPVSVNASLPHSIQPTIPPVIAPSVVPPLAPIPAIPPPRPLAPLPVRPPVIRPPLPQNGEVGSSDSDSDNDDSKARINQGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKAHEDEEAAASAPKDETEEELQYPFYTEGSKALLDARIYITKYSLARAALRIQRAQRRRDDPDEDMDAEMDWALTQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPRIIKHSTLKGHTERATDVAYSPVHDHLATASADRTAKYWNQGSLLKTFEGHLDRLARIAFHPSGKYVGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGHIVTVSHDRTIKLWSSNTTNEQTMDVD 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 566 IPR001680 GO:0005515
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 524 IPR001680 GO:0005515
Spst7g00361 569 MobiDBLite consensus disorder prediction 10 37 - -
Spst7g00361 569 Pfam pre-mRNA processing factor 4 (PRP4) like 146 172 IPR014906 -
Spst7g00361 569 Gene3D - 255 439 IPR015943 GO:0005515
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 525 557 - -
Spst7g00361 569 MobiDBLite consensus disorder prediction 1 117 - -
Spst7g00361 569 MobiDBLite consensus disorder prediction 40 79 - -
Spst7g00361 569 SMART pr04_2 141 194 IPR014906 -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 515 - -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 481 IPR001680 GO:0005515
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 435 - -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 348 IPR001680 GO:0005515
Spst7g00361 569 Pfam WD domain, G-beta repeat 399 430 IPR001680 GO:0005515
Spst7g00361 569 Pfam WD domain, G-beta repeat 438 472 IPR001680 GO:0005515
Spst7g00361 569 Pfam WD domain, G-beta repeat 520 557 IPR001680 GO:0005515
Spst7g00361 569 Pfam WD domain, G-beta repeat 350 388 IPR001680 GO:0005515
Spst7g00361 569 Pfam WD domain, G-beta repeat 315 348 IPR001680 GO:0005515
Spst7g00361 569 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 256 439 - -
Spst7g00361 569 Gene3D - 116 186 IPR036285 -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
Spst7g00361 569 Gene3D - 440 568 IPR015943 GO:0005515
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Spst7g00361 569 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Spst7g00361 569 PRINTS G protein beta WD-40 repeat signature 459 473 IPR020472 -
Spst7g00361 569 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Spst7g00361 569 ProSitePatterns Trp-Asp (WD) repeats signature. 459 473 IPR019775 -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 397 IPR001680 GO:0005515
Spst7g00361 569 SUPERFAMILY PRP4-like 124 179 IPR036285 -
Spst7g00361 569 PANTHER WD40 REPEAT PROTEIN 90 558 - -
Spst7g00361 569 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 483 559 - -
Spst7g00361 569 SMART WD40_4 349 388 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 265 306 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 518 557 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 391 430 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 475 515 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 433 472 IPR001680 GO:0005515
Spst7g00361 569 SMART WD40_4 309 348 IPR001680 GO:0005515
Spst7g00361 569 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 115 186 - -
Spst7g00361 569 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 474 - -
Spst7g00361 569 CDD WD40 280 557 - -
Spst7g00361 569 SUPERFAMILY WD40 repeat-like 270 556 IPR036322 GO:0005515
Spst7g00361 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Spst7g00361 569 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00361 360 556 U-box Gene Family AT2G33340 22.172 1.97e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00361 K12662 - gmx:100788948 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00361 7 2822860 2825538 Spst7g00361 7 2822860 2825538 ECH