Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00340 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAACTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGCTGAAGAAGGCCAAAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAACTTTATGAGTTTTCAAACACAAGCATGGAGCATACGCTTTCAAGGTACAGCAAAGGCACGGAACCAGATTCTGCAGAGCAACCTATTGATGTGATCCCAAAAGATGTTATGGTTATGGAGCCTGATACTAACCTTTTGAAGGATGAAATAACAAAGCTTCGAACGGCACACTTAAAGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAACACCTAGAAAATCAACTGAGTGAAGGGATACTAGCTGTCAAAGACAAGAAGGAACAAGTACTTCTAGAACAGCTTAGGAGGTCTAGGATACAGGAGCAAAAGGTTGTGCTGGAAAACGAAGTTCTGCGCAAACAGCTTGAGGAGATACAAAATAAAGCAAAGACACAGTTCCTTGAATTCAGTTCTTTGGATAGGACATTTTCCAAGAACAGTCCAAAATCTCTTTTCAATTGTGCTTCAGAGGAAAATGACCATTCAGATACTTCTTTGCAGTTAGGGTTGTCAACAGATTATGGTCGGCAGAGGAAAGGATTGAAAATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGA 744 0.4167 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGTEPDSAEQPIDVIPKDVMVMEPDTNLLKDEITKLRTAHLKMMGKELDGLSLKELQHLENQLSEGILAVKDKKEQVLLEQLRRSRIQEQKVVLENEVLRKQLEEIQNKAKTQFLEFSSLDRTFSKNSPKSLFNCASEENDHSDTSLQLGLSTDYGRQRKGLKIEPCNDSGSQVASQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00340 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Spst7g00340 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Spst7g00340 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 Pfam K-box region 95 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst7g00340 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Spst7g00340 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 Coils Coil 159 186 - -
Spst7g00340 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Spst7g00340 247 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Spst7g00340 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst7g00340 247 Coils Coil 126 146 - -
Spst7g00340 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst7g00340 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00340 Spst-Chr7 2688339 2692104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00340 1 240 MADS-box Gene Family AT5G13790 46.939 1.66e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst7g00340 K-box 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00340 - - gmx:100792278 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00340 7 2688339 2692104 Spst7g00340 7 2688339 2692104 ECH