Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00336 ATGTTGGTTGAGGATCCTGCCACCAATGATGTTGTGTCGTGGAATGGTGATGGAACAACGTTTGTGGTGTTGCAACCACCGGAGTTTGCTCGTTATCTTCTCCCAACTCTCTTCAACCATTGCAACTTCTCTAGCTTTGTTCGTCAGCTTAATACCTATTTATGCAATTCTCATGGACGAAAACAAGCGACTCAGCAAGGAGAATTGGCTGTTGAACTCAGAACTCACAACCATGAAGAGGAAGTGCAAGGAATTGCTTGA 261 0.4444 MLVEDPATNDVVSWNGDGTTFVVLQPPEFARYLLPTLFNHCNFSSFVRQLNTYLCNSHGRKQATQQGELAVELRTHNHEEEVQGIA 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00336 86 SUPERFAMILY "Winged helix" DNA-binding domain 2 53 IPR036390 -
Spst7g00336 86 SMART hsfneu3 2 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g00336 86 Gene3D - 1 84 IPR036388 -
Spst7g00336 86 Pfam HSF-type DNA-binding 2 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g00336 86 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 53 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00336 Spst-Chr7 2648586 2650736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00336 2 53 HSF AT2G41690 76.923 2.28e-23 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst7g00336 HSF_DNA-bind 7.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00336 K09419 - ini:109181427 95.5153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00336 7 2648586 2650736 Spst7g00336 7 2648586 2650736 ECH
Spst1g03407 1 42733099 42735148 Spst7g00336 7 2648586 2650736 PCT