Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00325 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGCTCTGTCTCCGATTGCAAGCAGATCGATTTCTTGCCCTTTACCTGCGATCGCTGTCACCAGGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTTATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATGCAAACATAACTTGGGAGAATCATGTCAACACTGACTGCGACCCATCGAACTATGAGAAAGTCACGAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGTTCGGTGGACTACTGTTTAAAGCATCGATTTGGACCTGATCATAAATGTCCTGGCCCCAGAAAAGTGGAAACAAGTTTTTCATTTAGGAGTCTTTTAAATGGGAGTAAAAAACAGGAGACCAAACCCCAGTCAAGTGCATCTGCATCATCTAGATGGTCTACAAGCTTTGTTAATGCAATTTCTAACATTCGAGCTTCGGCCGAGGCTGGTGTGTCAAAGTTGAGTGAAGTTAACCAATCGTGGTGGACAGAATCAGTTGGGGTGGGGCCAAGCAATAGCAGTGCTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTACCTCTGTTACTACTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGAAGTGGGAATAGTTCTGGAGCAAAGGTTACAATTGATGCTTGCCCCAAGTGTAGTAGAGGATTTCGGGATCCTGTTGCTCTTGTGCAACATGTGGAGAGGGATCATGGTGGCAATTCTAGATCATAG 858 0.4476 MGTPEFPDLGKHCSVSDCKQIDFLPFTCDRCHQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLVPDQDANITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCSVDYCLKHRFGPDHKCPGPRKVETSFSFRSLLNGSKKQETKPQSSASASSRWSTSFVNAISNIRASAEAGVSKLSEVNQSWWTESVGVGPSNSSAQVEQCPQCGAKFTSVTTLVDHVQKVHERSGNSSGAKVTIDACPKCSRGFRDPVALVQHVERDHGGNSRS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00325 285 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
Spst7g00325 285 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Spst7g00325 285 SMART c2h2final6 219 242 IPR013087 -
Spst7g00325 285 SMART c2h2final6 256 279 IPR013087 -
Spst7g00325 285 SUPERFAMILY beta-beta-alpha zinc fingers 220 275 IPR036236 -
Spst7g00325 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 247 IPR013087 -
Spst7g00325 285 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 245 - -
Spst7g00325 285 Gene3D - 2 60 IPR035896 -
Spst7g00325 285 Gene3D - 86 173 IPR035896 -
Spst7g00325 285 ProSitePatterns Zinc finger C2H2 type domain signature. 221 242 IPR013087 -
Spst7g00325 285 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Spst7g00325 285 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Spst7g00325 285 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Spst7g00325 285 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Spst7g00325 285 Gene3D Classic Zinc Finger 192 282 - -
Spst7g00325 285 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Spst7g00325 285 Pfam C2H2-type zinc finger 220 242 - -
Spst7g00325 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
Spst7g00325 285 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Spst7g00325 285 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Spst7g00325 285 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00325 Spst-Chr7 2550314 2553591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00325 1 285 C2H2 Transcription Factor Family AT2G41835 62.937 3.33e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g00325 zf-AN1 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00325 - - gmx:100786272 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00325 7 2550314 2553591 Spst7g00325 7 2550314 2553591 ECH
Spst1g03380 1 42394013 42395353 Spst7g00325 7 2550314 2553591 PCT