Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00313 ATGATGAACCACTTGACCATTGAGACGGAGGATTCTCTTGCAAGCTTGCTTGAGCTTGCAGCCAACAATGATGTTGAAGGTTTTAAACGAATGATCGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTGTGGTACAGTCGTCAAAAGGGATCAAGGCGGATGGTCAATGAGCTCAGAACCCCATTAATGGTTGCTGCTACCTATGGGAGCATGGATATTTTGGATCTGATTCTATCACTTTCTGGTTGTGATATTAATAAACCTTGTGGCCTTGACAAGAGCACTGCTCTTCATTGTGCGGCTTCAGGCGGGGCTGAAAATGCTGTTGATGTTGTTATATTGCTTCTAGCAGCAGGGGCTGATCCAAACTCTGTGGACGCAAATGGTCATCGTCCAGTTGATGTCATTATTGTTCCTCCCAAGCATGAGTCTGTTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGTGTGTAATCTCAGGGTGATCACGGCCCCATCAAATTCATATTCTCCACCTTTGTCGACTTCACCCGAGAACGAGTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTTGTTTCTTCTGCATCCGAGAAGAAAGAGTATCCTGTTGATCCATCCCTTCCTGACATCAAGAATAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAAGTCCGACCTTGTTCCCGGGCCTATTCGCATGATTGGACTGAATGCCCTTTTGTTCACCCAGGAGAGAATGCTCGGAGAAGGGACCCCAGAAAGTACCACTACAGTTGTGTCCCTTGTCCTGACTTTCGGAAGGGTGCTTGCCGACGAGGAGATATGTGTGAATATGCTCATGGAGTTTTCGAGTGCTGGCTGCATCCAGCACAATACCGTACCCGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCTTTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGCACATCTTCTGCTATGGAATTTGCTGCAGCCATGAACATGTTACCTGGCTCTCCTTCCTCAATGTCTGTCATGTCACCTTCACCGTTCACTCCACCTATGTCACCCTCTGCCAATGGCATGTCACACTCTTCCGTTGGCTGGCCCCAACCAAATGTCCCAGCCTTGCATCTACCAGGGAGCAATCTTCATTCCAGTCGTTTGAGATCTTCATTCAATGCCAGAGATATTCCGATGGATGACTTCGACTTGTTGCCTGAGTATGATGTTCAGCAACAGCAACAGCTCCTTAACGAATTCTCTTGCCTCTCCAAACAGCCTAATGCTATGAACCGCTCTGGTCGCATTAAAACTCTGACCCCTTCAAATCTTGATGATTTATTTTCTTCTGAGAGTTCATCCCCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCAACACATAAATCAGCTATTATTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAACTTTTCTTCTAAAAATGTCGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAGCATCAGGAAGGATGTCTCCTCGGAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGTTGCCGCTGCAGCTGCTGCCGCAGCAGGGTCCCCAGTCAATTCTTGGTCAAAATGGGGACCTTCCAATGGGACGTTGGATTGGGCTGTCAATGCTGATGAGTTAAGGAAGCATCGTAGGTCATCTTCGTTTGAGCACGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAATTCAGCGACAACTGTGTCAAGTGGTGCAGCAGCTGGATCCTCCAGCGAGGTATCAAATATGAGCACACAAATGGACTCTGTTGATCATGCCGTGTTAGGAGCATGGCTTGAACAAATGCAGCTGGATCATCTTGTGGCTCAGCAAAATTAA 2121 0.4649 MMNHLTIETEDSLASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSMDILDLILSLSGCDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDANGHRPVDVIIVPPKHESVRNSLEALLQTDDSIAVCNLRVITAPSNSYSPPLSTSPENESPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDDFDLLPEYDVQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAIINQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQASGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSATTVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDHLVAQQN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00313 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Spst7g00313 706 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Spst7g00313 706 Gene3D - 9 160 IPR036770 -
Spst7g00313 706 PANTHER UNKEMPT FAMILY MEMBER 18 650 IPR045234 -
Spst7g00313 706 MobiDBLite consensus disorder prediction 651 679 - -
Spst7g00313 706 Gene3D - 273 334 - -
Spst7g00313 706 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Spst7g00313 706 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Spst7g00313 706 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Spst7g00313 706 SMART ANK_2a 58 88 IPR002110 GO:0005515
Spst7g00313 706 SMART ANK_2a 93 125 IPR002110 GO:0005515
Spst7g00313 706 MobiDBLite consensus disorder prediction 174 194 - -
Spst7g00313 706 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Spst7g00313 706 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Spst7g00313 706 SUPERFAMILY Ankyrin repeat 14 139 IPR036770 -
Spst7g00313 706 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00313 Spst-Chr7 2450850 2452970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00313 8 699 C2H2 Transcription Factor Family AT5G12850 53.399 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst7g00313 Ank_2 3.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00313 - - gmx:100813554 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00313 7 2450850 2452970 Spst7g00313 7 2450850 2452970 ECH