Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00301 ATGGAGGGTTGCAAAAAGTCCCCTCTAAAGCCTTGGAAAAAAGGACCAACAAGGGGCAAAGGTGGCCCCCAAAATGCCTCATGTGAGTATAGAGGCGTTAGGCAAAGAACCTGGGGCAAATGGGTGGCTGAGATAAGAGAGCCTAAGAAGAGAACAAGACTCTGGCTTGGCTCCTTTGCCACCGCTGAAGAAGCTGCCTTGGCCTATGATGAGGCTGCAAGGAGACTCTATGGTCCCGATGCTTACCTCAACCTCCCCCACATGCAACCAAACCTCATAAACTCCACCACCAAATCTCAAAAGTTCAAGTGGTTCCCTTCCAAGAACTTCATCTCCATGTTTCCCTCCCGTGGATTGCTCAACCTTAATGCTCAACCGAGTGTCCATGTGATCCACCAGAGGCTGCAACAGCTTAAGCAAAATGGAGTGTTTGCAACCACTCAACCATCACATTCTAGTTCATCCACTCATCCAAAGGTGGTAGAACTTGAGAACATAGTCAGCCAAAACCATTCAGAGATTCTCCCTCCACTTCCACAAGATTCTCAAGTTTCACCACAAAATATAATTGGTGATTTTGAGGAGAAACCCGAGATAGACCTACTTGAGTTTCTTCAACAAATGGGAATACTAAAAGATGAAAGAGAGGCAGAGAAAACTGATAGCCCGGGAAGTTCAACAGTGTCTGAAGCTGCATCAAGAGATGACAGTGAACAACCAGGAGTGTTTTCTGACATGAGTAGCTTTAACTGGGAGGAATTGATTGAGATGCATGACCATGAAGTTGTGTATAATTATCTTGCATCAGAAGAAATCCAGTTTGAAGCATATGACATAAACGACGAACTTACCCTCTCCACTTCCATTTGGAACTACTGA 879 0.4516 MEGCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPHMQPNLINSTTKSQKFKWFPSKNFISMFPSRGLLNLNAQPSVHVIHQRLQQLKQNGVFATTQPSHSSSSTHPKVVELENIVSQNHSEILPPLPQDSQVSPQNIIGDFEEKPEIDLLEFLQQMGILKDEREAEKTDSPGSSTVSEAASRDDSEQPGVFSDMSSFNWEELIEMHDHEVVYNYLASEEIQFEAYDINDELTLSTSIWNY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00301 292 MobiDBLite consensus disorder prediction 222 243 - -
Spst7g00301 292 MobiDBLite consensus disorder prediction 1 27 - -
Spst7g00301 292 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Spst7g00301 292 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 MobiDBLite consensus disorder prediction 214 243 - -
Spst7g00301 292 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 257 - -
Spst7g00301 292 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Spst7g00301 292 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Spst7g00301 292 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00301 Spst-Chr7 2341859 2342737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00301 5 292 AP2-EREBP Transcription Factor Family AT3G57600 52.740 6.21e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst7g00301 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00301 - - gmx:100808363 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00301 7 2341859 2342737 Spst7g00301 7 2341859 2342737 ECH
Spst1g03365 1 42258972 42261154 Spst7g00301 7 2341859 2342737 PCT